Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urile_20pelagicus_20[genbank_20GCA_5F002173435.1_202017-06-06] 20,951 sequences; 1,210,663,266 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1104 154 1e-32 seq1769 147 2e-30 seq89 95.1 1e-14 seq645 84.2 2e-11 >seq1104 Length=759006 Score = 154 bits (170), Expect = 1e-32 Identities = 175/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || ||||| || || || ||||| ||||||||| |||| |||||| || Sbjct 140479 AAGATGCAGATCTTTGTAAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCC 140420 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | | |||| | || | ||| |||| ||||| || || |||||| |||| Sbjct 140419 AGTGACACCATTGAGAACG-TGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCCGA 140361 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || ||| |||| || | || ||||| |||||||| || | |||||||| |||||| Sbjct 140360 TCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTA 140301 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||| |||||| | || || ||| | |||||||| |||| || ||| Sbjct 140300 CAACATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGGC 140249 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| |||| |||||| ||| Sbjct 139792 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 139733 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | |||| || |||| ||||| || || |||||| |||| || Sbjct 139732 GACACCATTGAGAACG-TGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCA 139674 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | |||||||| ||||||||| Sbjct 139673 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 139614 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| |||||| | || || ||| | |||||||| |||| || ||| Sbjct 139613 CATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGGC 139565 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| |||| |||||| ||| Sbjct 140248 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 140189 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | |||| || |||| ||||| || || |||||| |||| || Sbjct 140188 GACACCATTGAGAACG-TGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCA 140130 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | |||||||| ||||||||| Sbjct 140129 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 140070 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| |||||| | || || ||| | |||||||| |||| || ||| Sbjct 140069 CATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGGC 140021 Score = 145 bits (160), Expect = 8e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| |||| |||||| ||| Sbjct 139336 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 139277 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | ||| |||| ||||| || || |||||| |||| || Sbjct 139276 GACACCATTGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAG 139217 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | ||| ||||| |||||||| || | |||||||| |||||||||| Sbjct 139216 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 139157 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| |||||| | || || ||| | || ||||| |||| || ||| Sbjct 139156 ATCCAGAAGGAATCTACTCTCCATCTTGTTCTGCGCCTGAGGGGTGGC 139109 Score = 145 bits (160), Expect = 8e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| |||| |||||| ||| Sbjct 140020 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 139961 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | ||| |||| ||||| || || |||||| |||| || Sbjct 139960 GACACCATTGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAG 139901 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| || | |||||||| |||||||||| Sbjct 139900 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 139841 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| |||||| | || || ||| | |||||||| |||| || ||| Sbjct 139840 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGGC 139793 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| |||| |||||| ||| Sbjct 139564 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 139505 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | ||| |||| ||||| || || |||||| |||| || Sbjct 139504 GACACCATTGAGAACG-TGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCA 139446 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | || |||||| || ||||| Sbjct 139445 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGTACCCTCTCAGATTACAA 139386 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| |||||| | || || || | |||||||| |||| || ||| Sbjct 139385 CATCCAGAAGGAATCTACTCTCCACCTTGTGCTGCGCCTGAGGGGTGGC 139337 >seq1769 Length=296722 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || || || || || || |||||||| ||||||||| | || || ||| || Sbjct 36062 AAAATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTTGAGCCC 36003 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | || | | | ||| | || | || |||| ||||| || || |||||| | || Sbjct 36002 AGTGATACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGAT 35943 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| || | || | || ||||| |||||||| |||| ||||||||| ||||||| Sbjct 35942 CAGCAGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTTTCCGACTAC 35883 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| ||||| | || ||||| ||||||||||| |||| || ||| Sbjct 35882 AACATCCAGAAGGAGTCCACTCTGCACTTGGTGCTGCGCCTGAGGGGTGGC 35832 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || |||||||| ||||||||| | || || ||| ||| Sbjct 35603 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTTGAGCCCAGT 35544 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| ||||| ||||| | || || Sbjct 35543 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCTGATCAG 35484 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | || ||||| |||||||| || | ||||||||| |||||||||| Sbjct 35483 CAGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTTTCCGACTACAAC 35424 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||| | || |||||| |||||||||| |||| || || Sbjct 35423 ATCCAAAAGGAGTCCACCCTGCATCTGGTGCTGCGCCTGAGGGGTGG 35377 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || |||||||| ||||||||| | || || ||| ||| Sbjct 35831 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTTGAGCCCAGT 35772 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| ||||| ||||| | || || Sbjct 35771 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCTGATCAG 35712 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | || ||||| |||||||| |||| ||||||||| ||||||||| Sbjct 35711 CAGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTTTCTGACTACAAC 35652 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| | || |||||| |||||||||| |||| || ||| Sbjct 35651 ATCCAGAAGGAGTCCACCCTGCATCTGGTGCTGCGCCTGAGGGGTGGC 35604 >seq89 Length=3357968 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 133395 CACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGA 133454 ||||||||| | ||||| || || |||||||| || |||||||| ||| ||||| Sbjct 2806668 CACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTG 2806609 Query 133455 ATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTCC 133509 || || ||||| || || || || ||||||||||| || ||||||||||||||| Sbjct 2806608 GTACTGGATGGGGAAGATGACGAAGCGGCGGGGGTTGTCCCGCAACAGCGGCTCC 2806554 >seq645 Length=3212271 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| || ||| ||| ||||| ||| |||||||| || ||||| ||||| | || | Sbjct 2912551 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 2912610 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||||||||| || || || ||||||||||||| ||| || || || || || | Sbjct 2912611 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 2912670 Query 133037 CCACCA 133042 | |||| Sbjct 2912671 CAACCA 2912676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500041810995840