Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urile_20pelagicus_20[genbank_20GCA_5F002173435.1_202017-06-06] 20,951 sequences; 1,210,663,266 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1287 102 6e-16 seq58 89.7 4e-12 seq427 87.8 1e-11 seq17793 86.0 5e-11 seq1980 86.0 5e-11 >seq1287 Length=783258 Score = 102 bits (112), Expect = 6e-16 Identities = 277/418 (66%), Gaps = 6/418 (1%) Strand=Plus/Minus Query 517257 CGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGA 517316 ||||| | || || || |||||||||||||| | ||||| ||||| || || || |||| Sbjct 256672 CGGCACTGACGTTCAGGATACCATTGGCATCGATGTCAAAGGTGACCTCGATCTGGGGGA 256613 Query 517317 CCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTT 517376 | || | | || || ||||| ||| | | |||| | ||||| || || || | Sbjct 256612 CTCCACGGGGTGCCGGGGGGATGCCTGTTAGGTCAAATTTGCCCAGCAAGTTGTTGTCCT 256553 Query 517377 TAGTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTAA-CTACAGTTTGATTATCTGA 517434 | || | | ||||||||| | | |||| || | || | | || || ||||| Sbjct 256552 TCGTCATAGCCCTCTCACCCTCGTACACCTGGACCAGGACGCTGC--TCTGGTTGTCTGA 256495 Query 517435 ATAAGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATAT 517493 || || || || |||| ||| ||| |||||| || ||||| | | || | | Sbjct 256494 GTAGGTGGTGAAGG-TCTGAGTTTGTTTGGTAGGAATGGTGGTGTTGCGCTTGATGAGAG 256436 Query 517494 TGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGA 517553 ||||| | ||||| ||||| || | || || || ||||| |||||||| | || | Sbjct 256435 CAGTCATCACTCCACCGGCTGTCTCGATGCCCAGGGACAGAGGGGTGACATCCAACAGCA 256376 Query 517554 CAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCAC 517613 | || || | || ||| | | || | || ||||||||||| | |||||| | Sbjct 256375 GCAGATCCTGCACATTCTCAGACTTGTCTCCCATGAGGATAGCTGCTTGCACAGCAGCGC 256316 Query 517614 CATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAA 517671 | || |||||||| ||||| ||||| | | | || || | ||| |||||||| || Sbjct 256315 CGTAAGCAACAGCCTCATCGGGATTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAA 256258 >seq58 Length=248746 Score = 89.7 bits (98), Expect = 4e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 366997 GTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCAT 367056 || || ||| | ||||| || ||||| || || ||| | ||| | | | ||||||||| Sbjct 166583 GTGGCTACAGTGGCATTCGGAATGGGCATCAACAAAGCAGATATCCGGATGGTTATTCAT 166524 Query 367057 TATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGAT 367116 || || || || ||| | || ||| ||||||||||||||||| ||||| ||||||||| Sbjct 166523 TACGGTGCCCCTAAGGAAATGGAATCCTATTATCAAGAAATTGGGAGAGCTGGTCGTGAT 166464 Query 367117 GG 367118 || Sbjct 166463 GG 166462 >seq427 Length=1578491 Score = 87.8 bits (96), Expect = 1e-11 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260 || |||||||||||||||| ||||| | ||||||||| | || |||||||| || || Sbjct 1127746 GGCTCATTAATAATTCTCATCACATTCAACCCAGCAATTGTCCCAGCATCTTTTGTAGCC 1127687 Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 || | || | ||||||||| || || || ||||||| ||| |||| Sbjct 1127686 TGACGCTGAGCATCGTTAAAGTAGGCTGGCACAGTAACAACAGCAT 1127641 >seq17793 Length=1118 Score = 86.0 bits (94), Expect = 5e-11 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||||| |||||||||||||| ||||| |||| | || || ||||| || ||||| Sbjct 284 CAAAAACTGTATTGGTTGGATTCATTGCGACTTGGTTCTTTGCAGCATCGCCGATCAGCC 343 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 ||||| || || || | || || || || || || ||||| |||||||| |||| Sbjct 344 TCTCTGTATCCGTGAAGGCGACGTAGCTCGGCGTGGTCCGGTTACCCTGATCATTGGCAA 403 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 | ||||| || || || | ||| | || || ||||| | | || || || | ||| | Sbjct 404 TGATTTCCACCTTCCCGTGTTGGAACACGCCAACACAGGAATAGGTGGTGCCAAGATCGA 463 Query 518703 TACCAATAGC 518712 | || | ||| Sbjct 464 TTCCGACAGC 473 >seq1980 Length=225955 Score = 86.0 bits (94), Expect = 5e-11 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||||| |||||||||||||| ||||| |||| | || || ||||| || ||||| Sbjct 2332 CAAAAACTGTATTGGTTGGATTCATTGCGACTTGGTTCTTTGCAGCATCGCCGATCAGCC 2391 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 ||||| || || || | || || || || || || ||||| |||||||| |||| Sbjct 2392 TCTCTGTATCCGTGAAGGCGACGTAGCTCGGCGTGGTCCGGTTACCCTGATCATTGGCAA 2451 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 | ||||| || || || | ||| | || || ||||| | | || || || | ||| | Sbjct 2452 TGATTTCCACCTTCCCGTGTTGGAACACGCCAACACAGGAATAGGTGGTGCCAAGATCGA 2511 Query 518703 TACCAATAGC 518712 | || | ||| Sbjct 2512 TTCCGACAGC 2521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779782742367406