Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urile_20pelagicus_20[genbank_20GCA_5F002173435.1_202017-06-06] 20,951 sequences; 1,210,663,266 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1287 289 4e-73 seq1980 196 6e-45 >seq1287 Length=783258 Score = 289 bits (320), Expect = 4e-73 Identities = 1039/1602 (65%), Gaps = 42/1602 (3%) Strand=Plus/Minus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 |||||| || |||| || || ||||| ||||| ||||| |||||||| || || | Sbjct 256791 TTCATCCTCCGCTTTGTATTTCTCCGCTTCTTGCACCATACGGTCAATGTCGTCCTT-GC 256733 Query 6628 TAAT-CTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTT 6686 ||| | || || ||||| || || || ||||| | ||||||| | ||| || Sbjct 256732 TAAGGCGACCTTTGTCATTGGTGATGGTGATCTTGTTCTCCTTACCCGTGCTCTTGTCCA 256673 Query 6687 CAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTG 6746 | ||||| || |||| |||||||| ||||| | || || | || | || || || Sbjct 256672 CGGCACTGACGTTCAGGATACCATTGGCATCGATGTCAAAGGTGACCTCGATCTGGGGGA 256613 Query 6747 TACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCG 6806 || | ||||| | || || || |||| |||||| | || || || |||| ||| Sbjct 256612 CTCCACGGGGTGCCGGGGGGATGCCTGTTAGGTCAAATTTGCCCAGCAAGTTGTTGTCCT 256553 Query 6807 TCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGT-TGATTATCTTGT 6865 ||| | | | ||||| || || || | | || || | | || || ||| Sbjct 256552 TCGTCATAGCCCTCTCACCCTCGTACACCTGGACCAGGAC-GCTGCTCTGGTTGTCTGAG 256494 Query 6866 GCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGG 6925 || | |||| | || || || | ||||| || || || | | || | | Sbjct 256493 TAGGTGGTGAAGGTCTGAGTTTGTTTGGTAGGAATGGTGGTGTTGCGCTTGATGAGAGCA 256434 Query 6926 GTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAAC 6985 ||||| | ||||| || |||| || || |||||||| || || ||||| || | | Sbjct 256433 GTCATCACTCCACCGGCTGTCTCGATGCCCAGGGACAGAGGGGTGACATCCAACAGCAGC 256374 Query 6986 AGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCG 7045 || || || ||| || | || ||| | | ||| || ||||| || | || ||| Sbjct 256373 AGATCCTGCACATTCTCAGACTTGTCTCCCATGAGGATAGCTGCTTGCACAGCAGCGCCG 256314 Query 7046 TATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105 || || || ||||||||||| || || | || || || ||||| || || || | ||| Sbjct 256313 TAAGCAACAGCCTCATCGGGATTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAGTCC 256254 Query 7106 GATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTC 7165 || || | ||| || || ||||| || || || ||||| |||| ||||| || | Sbjct 256253 TGTAGCAGCTTTTGGATCTTGGGGATACGGGTAGAGCCACCTACCAGCACGATCTCCTGG 256194 Query 7166 ACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTA 7225 | | || || | ||| | || || || | || || || || |||| | Sbjct 256193 ATCTGGCCCTTGTCTAGCTTGGCATCACGCAGAGCCTTCTCCACTGGCTCCAGGGTGCCA 256134 Query 7226 CGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCA 7285 ||||| | || | || |||||||| || ||||| |||||||| || ||||| ||| Sbjct 256133 CGGAAGAGATCAGCATTGAGCTCCTCAAAGCGGGCACGAGTAATGGAGGTGTAGAAGTCA 256074 Query 7286 ACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGA---TAACGTT 7342 | ||| ||||| | || ||||| |||||| | | || ||| || || | || Sbjct 256073 ATGCCCTCGTACAGGGAGTCAATCTCAATGCTAGCCTG---CGTGGAGGAGCTCAGGGTG 256017 Query 7343 CGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATA 7402 ||||| || | ||| || || || || | || | | || ||| ||| || | ||| Sbjct 256016 CGCTTCGCCCTCTCGCAAGCTGTACGGAGTCGCCTCACTGCTCGCTTGTTGCCAGCAATG 255957 Query 7403 TCTTTCTTATGTTTACGTTTAAACTCTT-CAGAGAAGTGTCGA--AGGAGTCTCGAATCG 7459 || ||| || ||||| || || |||| || | || || | | | | | || Sbjct 255956 TCACGCTTGTGCTTACGCTTGAATTCTTCCACAAAATGGTTCACCATGCGGTT---GTCA 255900 Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519 || || || ||||||| || || || || || || | || || |||||||| || | Sbjct 255899 AAGTCCTCCCCACCCAGATGGGTGTCACCAGCTGTGGACTTCACCTCAAAGATGCCATCC 255840 Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTC 7579 |||||| | | | || |||||||| || || || || | |||||| ||||| || ||| Sbjct 255839 TCAATGGTAAGGATGGACACATCAAAAGTGCCCCCTCCTAAGTCAAAGATGAGCACATTC 255780 Query 7580 GTATCGTCGTC------TTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 | || || | ||||| || || || || || || || || || || || Sbjct 255779 TTCTCTCCGGCCCGAGTACCTTTCTTGTCCAGGCCATAGGCTATCGCGGCTGCTGTGGGC 255720 Query 7634 TCATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTG 7692 ||||| |||||||| | ||| || ||||||| ||| || | |||||||| || || || Sbjct 255719 TCATTGATAATACGCATCACA-TTAAGGCCAGTAATGGTGCCAGCATCTTTGGTGGCCTG 255661 Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752 || || || || || ||||| || || || || | ||| || | | || || || Sbjct 255660 GCGCTGGGAGTCATTGAAGTAAGCAGGCACTGTGATGACAGCATTCTGTACCTTGCGCCC 255601 Query 7753 GAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGC 7812 ||||||| || || || || ||||| ||||| || ||||| || ||||| || | Sbjct 255600 CAGATACGCCTCAGCAATCTCCTTCATCTTGGTGAGGACCATGGAGCTGATCTCCTCTG- 255542 Query 7813 CGCAAACTGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCAC 7871 | | | || ||| | ||||| || | || |||| | | |||| || || ||| Sbjct 255541 GGAAGAAGGTCTTCATCTCACCCTTGTACTCCACTTGCACCTTGGGCTT----GC--CAC 255488 Query 7872 CGGGGATAACCTTA---TACGACCAATCTTTCATATCGTCTTGGACCTGT-TGGTCCGAA 7927 | | | ||| | ||| ||| | ||||| || | || | |||| |||| | Sbjct 255487 CCTCGTTCACCACACGGAACGGCCAGTGCTTCATGTCAGCCTGCA-CTGTGGGGTCATCA 255429 Query 7928 AACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTT 7987 |||| | || || |||||||| |||||||| | ||||| | |||||||| || Sbjct 255428 TACTTGCGGCCAATGAGACGCTTGGCATCAAAGATGGTGTTGGTAGGGTTCATAGCCACC 255369 Query 7988 TGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGAT 8047 |||||||| || || || ||||| || || || || || || || || ||||| | | Sbjct 255368 TGGTTCTTGGCAGCATCGCCGATGAGGCGCTCTGTA---TCAGTGAAGGCCACGTA-GCT 255313 Query 8048 GGG-GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGAC 8106 ||| || || || || || ||||| || || || || || || | | | || |||| Sbjct 255312 GGGCGTGGTGCGGTTGCCCTGGTCATTGGCGATGATCTCCACTTTGCCATGCTGAAAGAC 255253 Query 8107 GCCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 || ||||| || ||||| || || || || || |||||||| Sbjct 255252 ACCCACGCAGGAGTACGTGGTGCCCAAGTCGATGCCGATTGC 255211 >seq1980 Length=225955 Score = 196 bits (216), Expect = 6e-45 Identities = 371/543 (68%), Gaps = 6/543 (1%) Strand=Plus/Plus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || || || || || ||||| ||||| || | || ||||| ||||| ||||| || Sbjct 706 GCACCATAAGCCACAGCTTCATCAGGGTTGATGCTCTTGTTCAGCTCTTTGCCGTTGAAG 765 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 | ||| | || | ||||| || ||||| || ||||| ||||| |||| || || Sbjct 766 AAGTCCTGCAGCAGCTTCTGAATCTTTGGGATACGAGTCGACCCACCAACCAGCACAATG 825 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 |||| | | |||||| |||| ||| | || || || | ||||||||||| |||| Sbjct 826 TCATGGATCTGCGATTTGTCGAGCTTGGCATCCCGCAGGGCCTTTTCGACAGGATCCAGG 885 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 ||||||| ||| ||| || ||||| || || | ||||||||| || ||| Sbjct 886 GTGCCGCGGAACAGGTCGGCGTTCAGCTCTTCAAAGCGAGCTCTGGTAATGGACGTGTAG 945 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 || |||| || || || | || ||||||||||| | | || | | || || | Sbjct 946 AAGTCAATACCCTCATAGAGAGAGTCAATTTCAATACTGGCCTGCGTGCTAGATGACAGA 1005 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || |||||||| ||||| || || || || | ||||| | || | | ||| | | Sbjct 1006 GTACGCTTTGCACGCTCGCATGCAGTGCGGAGGCGACGGACTGCTCTCTTGTTCTCAGTG 1065 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTG-TCGA--AGGAGTCTCGAA 7456 || |||||||| || || || || || || | |||||| | || | | | | Sbjct 1066 ATGTCTTTCTTGTGCTTGCGCTTGAATTCAGCGATGAAGTGGTTGACCATGCGGTTG--- 1122 Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| ||||| ||||||||||| || || || || || | ||| || |||||||| || Sbjct 1123 TCGAAGTCTTCTCCACCCAAGTGAGTGTCACCTGCAGTGGATTTCACCTCAAAGATGCCA 1182 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 ||||||| | | | || |||||||| || ||||| || |||||||| || || ||| Sbjct 1183 TCTTCAATAGTCAGAATTGACACATCAAAGGTGCCACCTCCAAGGTCAAAGATAAGAACG 1242 Query 7577 TTC 7579 ||| Sbjct 1243 TTC 1245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634966466658840