Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urile_20pelagicus_20[genbank_20GCA_5F002173435.1_202017-06-06] 20,951 sequences; 1,210,663,266 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1104 127 5e-24 seq1769 122 2e-22 seq24 93.3 9e-14 >seq1104 Length=759006 Score = 127 bits (140), Expect = 5e-24 Identities = 156/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| ||||| || || || || || |||||||| | || || | |||||||| Sbjct 139356 ACAAGGTGGAGAGTAGATTCCTTCTGGATGTTGTAATCTGAGAGGGTACGACCATCTTCC 139415 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || || || || ||||||||||| ||||| || Sbjct 139416 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGG 139475 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || ||| ||| ||||||||||||||||| ||| || || || ||||| | ||| Sbjct 139476 ATCTTTGCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCGACCTCGAGGGTGATGGTC 139532 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || || || | ||||| Sbjct 139533 TTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 139564 Score = 127 bits (140), Expect = 5e-24 Identities = 156/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || ||||| || || || || ||||| |||| || || | |||||||| Sbjct 140268 ACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 140327 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || || || || ||||||||||| ||||| || Sbjct 140328 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGG 140387 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || ||| ||| ||||||||||||||||| ||| || || || ||||| | ||| Sbjct 140388 ATCTTTGCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCGACCTCGAGGGTGATGGTC 140444 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || ||||| || | ||||| Sbjct 140445 TTGCCGGTCAGGGTCTTTACAAAGATCTGCAT 140476 Score = 125 bits (138), Expect = 2e-23 Identities = 163/224 (73%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 || || | || |||||| || ||||| || || || || || ||||| |||| || || Sbjct 139116 CTCAGGCGCAGAACAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTG 139175 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | |||||||| |||||||| || |||||||| || | || || || || ||||||||| Sbjct 139176 CGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCT 139235 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCA 195096 || ||||| || || ||| ||| || |||||||||||||| ||| || || || Sbjct 139236 TCCTTGTCCTGGATCTTTGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCGACCTCG 139292 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || |||| || || || || | ||||| Sbjct 139293 AGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 139336 Score = 118 bits (130), Expect = 2e-21 Identities = 154/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || ||||| || || || || ||||| |||| || || | |||||||| Sbjct 139812 ACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 139871 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || || || || ||||||||||| ||||| || Sbjct 139872 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGG 139931 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || ||| ||| || |||||||||||||| ||| || || || ||||| | ||| Sbjct 139932 ATCTTTGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCGACCTCGAGGGTGATGGTC 139988 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || || || | ||||| Sbjct 139989 TTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 140020 Score = 113 bits (124), Expect = 1e-19 Identities = 153/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || ||||| || || || || ||||| |||| || || | |||||||| Sbjct 139584 ACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 139643 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || || || || ||||||||||| ||||| || Sbjct 139644 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGG 139703 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || || ||||||||||||||||| ||| || || || ||||| | ||| Sbjct 139704 ATCTTGGCTTTCACGTTCTCAATGGTGTC---ACTGGGCTCGACCTCGAGGGTGATGGTC 139760 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || || || | ||||| Sbjct 139761 TTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 139792 Score = 113 bits (124), Expect = 1e-19 Identities = 153/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || ||||| || || || || ||||| |||| || || | |||||||| Sbjct 140040 ACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 140099 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || || || || ||||||||||| ||||| || Sbjct 140100 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGG 140159 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || || ||||||||||||||||| ||| || || || ||||| | ||| Sbjct 140160 ATCTTGGCTTTCACGTTCTCAATGGTGTC---ACTGGGCTCGACCTCGAGGGTGATGGTC 140216 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || || || | ||||| Sbjct 140217 TTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 140248 >seq1769 Length=296722 Score = 122 bits (134), Expect = 2e-22 Identities = 155/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || |||||||| ||||| || ||||| |||| ||| || | ||||||||| Sbjct 35395 ACCAGATGCAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGCCCATCTTCC 35454 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| | | || || || || |||||||| || ||||| || Sbjct 35455 AGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCAGGCGGAATGCCCTCCTTGTCCTGG 35514 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||| |||||||||||||| ||| || || || ||||| | ||| Sbjct 35515 ATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCAACCTCCAGGGTGATGGTC 35571 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || || || | ||||| Sbjct 35572 TTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 35603 Score = 116 bits (128), Expect = 8e-21 Identities = 152/209 (73%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| ||||||||||| || || || ||||| |||| ||| || | ||| ||||| ||||| Sbjct 35856 GTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGCCCGTCTTCCAGCTG 35915 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || ||||| | | || || || || ||||||||||| ||||| || || || Sbjct 35916 CTTGCCAGCAAAGATCAACCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTT 35975 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCC 195113 |||||| || |||||||| || ||| || || || ||||| | ||||| || Sbjct 35976 GGCCTTGACATTTTCAATGGTATC---ACTGGGCTCAACCTCCAGGGTGATGGTCTTGCC 36032 Query 195114 TGTCAAAGTTTTTACGAACACTTGCATTT 195142 |||| || || || || | ||||||| Sbjct 36033 CGTCAGGGTCTTCACAAAGATCTGCATTT 36061 Score = 109 bits (120), Expect = 1e-18 Identities = 152/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || |||||||| || || || ||||| || | ||| || | ||| ||||| Sbjct 35623 ACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGCCCGTCTTCC 35682 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| | | || || || || |||||||| || ||||| || Sbjct 35683 AGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCAGGCGGAATGCCCTCCTTGTCCTGG 35742 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||| |||||||||||||| ||| || || || ||||| | ||| Sbjct 35743 ATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCAACCTCCAGGGTGATGGTC 35799 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || || || | ||||| Sbjct 35800 TTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 35831 >seq24 Length=4688945 Score = 93.3 bits (102), Expect = 9e-14 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010 |||||||||||||||| |||| || || | |||||||| ||||||||||| || || | Sbjct 2769194 CTTTTTGAATATTGTAGTCGGACAGTGTGCGTCCATCTTCTAGCTGCTTACCAGCAAAAA 2769253 Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 ||||||| || || || |||||||||||| Sbjct 2769254 TAAGTCGCTGCTGATCAGGAGGAATGCCT 2769282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109183776653417