Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urile_20pelagicus_20[genbank_20GCA_5F002173435.1_202017-06-06] 20,951 sequences; 1,210,663,266 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1769 120 2e-22 seq1104 113 3e-20 >seq1769 Length=296722 Score = 120 bits (132), Expect = 2e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||||| | || |||||||| | ||| || ||||| ||||| ||||| ||| Sbjct 35833 CCACCCCTCAGGCGCAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAA 35892 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || | || |||||||| || || ||||| || | | ||||| || | || Sbjct 35893 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCAGGGGGA 35952 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || |||||||| ||||| ||||| | | || | |||| || |||||| Sbjct 35953 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTATCACTGGGCTCAACC 36012 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATTC 34985 || | ||| ||||| || ||||| || |||||||||||||||||||| ||| Sbjct 36013 TCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATTTTC 36063 Score = 116 bits (128), Expect = 2e-21 Identities = 166/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 34752 TTTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCC 34811 || || ||||||| | || |||| || | ||| || || || ||||| ||||| Sbjct 35374 TTACCACCCCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTTTGGATGTTGTAGTCG 35433 Query 34812 GAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGC 34871 |||||| | || |||| |||||||| || || ||||| || | | ||||| || || Sbjct 35434 GAAAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCAGGC 35493 Query 34872 GGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCT 34929 || | ||||||||||| ||||| ||||| || || || | |||| || || Sbjct 35494 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCT 35551 Query 34930 CAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| || | ||| ||||| || ||||| || |||||||||||||||||||| Sbjct 35552 CAACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 35603 Score = 114 bits (126), Expect = 8e-21 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||||| | || |||| || | ||| || ||||| ||||| ||||| ||| Sbjct 35605 CCACCCCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAA 35664 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || | || |||||||| || || ||||| || | | ||||| || |||| Sbjct 35665 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCAGGCGGA 35724 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | ||||||||||| ||||| ||||| || || || | |||| || ||||| Sbjct 35725 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCAA 35782 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| ||||| || ||||| || |||||||||||||||||||| Sbjct 35783 CCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 35831 >seq1104 Length=759006 Score = 113 bits (124), Expect = 3e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || ||| | || |||| |||||||| || |||||||| Sbjct 139601 TTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 139660 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | ||||| || | || | || |||||||| ||||| ||| ||| Sbjct 139661 GATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTCACGTT 139720 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | |||| || ||| || |||| ||| ||||| || || || || |||||||| Sbjct 139721 CTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 139780 Query 34970 AAAGATCTGCAT 34981 |||||||||||| Sbjct 139781 AAAGATCTGCAT 139792 Score = 113 bits (124), Expect = 3e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || ||| | || |||| |||||||| || |||||||| Sbjct 140057 TTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 140116 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | ||||| || | || | || |||||||| ||||| ||| ||| Sbjct 140117 GATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTCACGTT 140176 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | |||| || ||| || |||| ||| ||||| || || || || |||||||| Sbjct 140177 CTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 140236 Query 34970 AAAGATCTGCAT 34981 |||||||||||| Sbjct 140237 AAAGATCTGCAT 140248 Score = 105 bits (116), Expect = 4e-18 Identities = 141/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || ||| | || |||| |||||||| || |||||||| Sbjct 139829 TTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 139888 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | ||||| || | || | || |||||||| ||||| || || | Sbjct 139889 GATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTCAC--A 139946 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | |||| || ||| || |||| ||| ||||| || || || || |||||| Sbjct 139947 TTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTC 140006 Query 34968 ACAAAGATCTGCAT 34981 |||||||||||||| Sbjct 140007 ACAAAGATCTGCAT 140020 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| || || || ||| | || |||| |||||||| || |||||||| Sbjct 139373 TTCCTTCTGGATGTTGTAATCTGAGAGGGTACGACCATCTTCCAGCTGCTTGCCGGCAAA 139432 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | ||||| || | || | || |||||||| ||||| || ||| Sbjct 139433 GATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTCACGTT 139492 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | |||| || ||| || |||| ||| ||||| || || || || |||||||| Sbjct 139493 CTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 139552 Query 34970 AAAGATCTGCAT 34981 |||||||||||| Sbjct 139553 AAAGATCTGCAT 139564 Score = 104 bits (114), Expect = 2e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || ||| | || |||| |||||||| || |||||||| Sbjct 140285 TTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 140344 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | ||||| || | || | || |||||||| ||||| || ||| Sbjct 140345 GATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTCACGTT 140404 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | |||| || ||| || |||| ||| ||||| || || || || ||||| || Sbjct 140405 CTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTTAC 140464 Query 34970 AAAGATCTGCATATT 34984 |||||||||||| || Sbjct 140465 AAAGATCTGCATCTT 140479 Score = 96.9 bits (106), Expect = 2e-15 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || ||| | || |||| |||||||| || || || || Sbjct 139145 TTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAA 139204 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | ||||| || | || | || |||||||| ||||| || || | Sbjct 139205 GATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTCAC--A 139262 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | |||| || ||| || |||| ||| ||||| || || || || |||||| Sbjct 139263 TTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTC 139322 Query 34968 ACAAAGATCTGCAT 34981 |||||||||||||| Sbjct 139323 ACAAAGATCTGCAT 139336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324550707955128