Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urile_20pelagicus_20[genbank_20GCA_5F002173435.1_202017-06-06] 20,951 sequences; 1,210,663,266 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq445 132 9e-26 seq1218 113 8e-20 seq1225 87.8 3e-12 >seq445 Length=2383620 Score = 132 bits (146), Expect = 9e-26 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 241430 AGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGAC 241489 || |||| |||||| | || || | | ||||| || ||| | ||||| | | Sbjct 931294 AGCTGGGAGACCTGGGCGCGGAGGAGGTTGGCGGTGGCGGCCAGCTCGGCGTTCTGCCCC 931235 Query 241490 TTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCAT 241549 |||||| ||||||| |||||||||||||| |||||||| ||||| || ||||||||||| Sbjct 931234 TTGAGCGCCTTCACCTTCTCCTCCAGCCGGGCGATGCGCTCCAGCTTCCGCCGGCGGCAC 931175 Query 241550 TTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCC 241609 |||| ||| || | ||||||||| || | ||| || |||||||| | || |||||| | Sbjct 931174 TTGGAGGCGGCGATGCGGTTCCGCAGCCGCTTGCGCTCCGCCTTCAGCCGCTCCTGGCTC 931115 Query 241610 TCCATGTCGATCGGAGAC 241627 ||| ||| | ||| ||| Sbjct 931114 TCCGCGTCCAGCGGCGAC 931097 >seq1218 Length=826207 Score = 113 bits (124), Expect = 8e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||||| || || || ||||| ||||| || || || | | ||||| || ||| Sbjct 24081 AGGACCTTTTGCTTAAGCTGGGCGACCTGCTCGCGGAGCAGGCTGGCGGTGGAGGCCAGC 24140 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | |||||| |||||| ||||||||||| || | ||| || ||||| Sbjct 24141 TCCGTGTTCTGGCTCTTGAGGCTCTTCACCTTCTCCTCCAGGCGGGAGATCCGCTCCAGC 24200 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 || | | |||||| |||| ||| || | ||| |||| || | ||| |||||||||||| Sbjct 24201 TTCCTCTTGCGGCACTTGGAGGCGGCGATGCGATTCCTCAGCCGCTTTCGTTCCGCCTTG 24260 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGA 241626 || || ||||| ||||||||||| || || Sbjct 24261 ATACGCTCCTGCGTGTCCATGTCGATGGGGGA 24292 >seq1225 Length=250662 Score = 87.8 bits (96), Expect = 3e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 213813 ACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTC 213872 |||| || |||||| ||||| || | ||| || || ||| ||||| |||| | | | Sbjct 31318 ACTCGCTTCATGAAGAGGTCAGGAATCCAGAGGGCAAAGAAGAGGTCTCTGGCTCGCTGC 31377 Query 213873 TCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGC 213932 || || ||||| ||| || | || ||||| |||||||||||| ||||| ||| Sbjct 31378 TCTTCTTTTCCAGTGTTCTTCTTTAAGTCAAGAAACTCAAAGATGTCCAAATGCCATGGC 31437 Query 213933 TCCATGTAGATGGCAAAGGCGCCCGGCCTCT 213963 |||| |||||||||||| || || || |||| Sbjct 31438 TCCAGGTAGATGGCAAAAGCCCCGGGTCTCT 31468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931288843203840