Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urile_20pelagicus_20[genbank_20GCA_5F002173435.1_202017-06-06] 20,951 sequences; 1,210,663,266 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1287 123 2e-22 seq1769 89.7 3e-12 >seq1287 Length=783258 Score = 123 bits (136), Expect = 2e-22 Identities = 363/552 (66%), Gaps = 8/552 (1%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||||| || || || || || || || ||| || || | ||| | || |||| ||| Sbjct 255211 GCAATCGGCATCGACTTGGGCACCACGTACTCCTGCGTGGGTGTCTTTCAGCATGGCAAA 255270 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || || || ||||||||||| || || | || || || || || | || ||| Sbjct 255271 GTGGAGATCATCGCCAATGACCAGGGCAACCGCACCACGCCCAGCTACGTGGCCTTCACT 255330 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || || || | || || || |||||||| || | || | || || ||| || Sbjct 255331 GATACAGAGCGCCTCATCGGCGATGCTGCCAAGAACCAGGTGGCTATGAACCCTACCAAC 255390 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || || |||||||| || | | ||||| || || | |||||| |||| || || || Sbjct 255391 ACCATCTTTGATGCCAAGCGTCTCATTGGCCGCAAGTATGATGACCCCACAGTGCAGGCT 255450 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC- 474627 || ||| || ||||| || ||| | || | ||||| || || | | ||| Sbjct 255451 GACATGAAGCACTGGCCGTTCCGTGTGGTGAACGAGGGTGGCAAGCCCAAGGTGCAAGTG 255510 Query 474628 -AATACACGCAGGTGAAACTAA-ACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTA 474685 | |||| | ||||| | || || | ||| || || | || || ||||| | Sbjct 255511 GAGTACAAG--GGTGAGATGAAGACCTTCTTC-CCAGAGGAGATCAGCTCCATGGTCCTC 255567 Query 474686 GCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAAT 474744 |||| ||||| | | || ||| | ||||| || | | ||| |||| || || Sbjct 255568 ACCAAGATGAAGGAGATTGCTGAGG-CGTATCTGGGGCGCAAGGTACAGAATGCTGTCAT 255626 Query 474745 TACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAAT 474804 || || || || || || ||||| || || || || || || |||||||| || | || Sbjct 255627 CACAGTGCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGATGCTGGCACCAT 255686 Query 474805 TGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGG 474864 | | || |||||||| | |||||||| ||||| || ||||||||||| | || ||||| Sbjct 255687 TACTGGCCTTAATGTGATGCGTATTATCAATGAGCCCACAGCAGCCGCGATAGCCTATGG 255746 Query 474865 TCTTGATAAGAA 474876 || || ||||| Sbjct 255747 CCTGGACAAGAA 255758 >seq1769 Length=296722 Score = 89.7 bits (98), Expect = 3e-12 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| || ||||| |||||||| || | | || |||||||| ||||| ||||||||| Sbjct 35905 TCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCAGGGGGAATGCCTTCCTTG 35964 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 || || ||||| |||||| |||||| |||||| || | | || ||||| || Sbjct 35965 TCCTGGATCTTGGCCTTGACATTTTCAATGGTATCACTGGGCTCAACCTCCAGGGTGATG 36024 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||| || || || || Sbjct 36025 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTG 36056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267280509955748