Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urile_20pelagicus_20[genbank_20GCA_5F002173435.1_202017-06-06] 20,951 sequences; 1,210,663,266 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq221 268 1e-66 seq114 134 2e-26 >seq221 Length=1754029 Score = 268 bits (296), Expect = 1e-66 Identities = 657/990 (66%), Gaps = 7/990 (1%) Strand=Plus/Minus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 |||||||||||| || |||| ||||| || || || |||||| || ||| || | Sbjct 1585155 TGTGTCGCAGATACTCTTCCAAACATTTCACTGCAAAAGGGTCAACATCAGTGTCAAACT 1585096 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 |||| || || | ||||| ||| |||| ||||||| || |||||| ||| || | Sbjct 1585095 TATTAGCAAAGAAGTGGTG---GTTTCGTAGCATCCAGTTCAGGTCTCCTACCCCAAAAA 1585039 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 | ||||| || || | ||| || || |||| || ||||| | || || || | ||||| Sbjct 1585038 CACAGACAGAGCGAACGTGAACTCCACTGCATGGTGGGTAAGGTGCACCCTTGGACACGT 1584979 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 ||||||| ||||||||||||| ||||||||||| | || | |||||| || ||| | Sbjct 1584978 CACCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGTGCATTCATGTCAGAAACGTCAT 1584919 Query 160285 ATTTGTACATCAGGGGA-ACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343 | |||| || || || || ||||| || || | || || | ||| | || ||||| Sbjct 1584918 ACTTGT-CACTAGAAGACACTGCACCTGGGACTTCAGGGATTCTCTGAATTGTTGCCCAT 1584860 Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTG 160403 | || ||| || |||||||| || || || | ||| || || |||| | ||| ||| Sbjct 1584859 AAGTATTCATCTGGGCTGTAAGTATCTTTTGCCCACTCAATTAACTTAACTATTTTGCTG 1584800 Query 160404 TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463 | | |||| || | |||| | || ||||| || || || || || || Sbjct 1584799 CTTTGTAATACGTATTCTACAAATCTTCTGCTAACAACAAAATAGGCACTACCAGAAAAA 1584740 Query 160464 ATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTC 160523 || || | | ||| || | |||||| || ||||| | || | Sbjct 1584739 ATTGGAGTACTGAGAGGTGGTAGCTGTTTGTCTATGCCTGTGTTTTTTATTTTACCATCA 1584680 Query 160524 ACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCT 160583 | | | | || | || |||||||| || || | ||||| |||||| || Sbjct 1584679 ATAATCTCATGGTGTTTTTTCCACCTTACTTCTTTATAAACAGGCATTTTTTCCGTTTCC 1584620 Query 160584 AGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGC 160643 | ||||| |||| | || | ||| | | || || || || |||| ||||| | Sbjct 1584619 AAGCTGTTTTCACCTTTAAGGGCTTTTAATTTCTCTACTATTTCCTGGTTGGTCTTTATA 1584560 Query 160644 GGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGG 160703 |||||||| | || || | |||||||| ||| ||||| || | || ||| || Sbjct 1584559 GGAAAGTCCATGCCACAGAGGTTTATCAGGTATTTCCAGTTTGAACTTCTTCTGTGGAGA 1584500 Query 160704 TCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCT 160763 || ||||||| ||||| |||||||||||||||||||||||||| || || || ||||| Sbjct 1584499 TCTTTCATGCAGTTAATGTCTGCCTGCACGCGGCTCCAGGAAGCATATACAACACTCTCT 1584440 Query 160764 AGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAG 160823 | | |||| | |||||| ||||| ||||| || || |||||| ||| | ||| || Sbjct 1584439 AACTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATTCCCTTCACAG-CAGCAAA 1584381 Query 160824 AACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGAT 160882 || | || | | |||| ||| || || | ||| || | |||||||| || ||||| Sbjct 1584380 AAAAGATTCTGGAGACTTTTTGTCAACATGAATGCAGTAAAAATTCTGAGGGGCATAGAT 1584321 Query 160883 GGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTAT 160942 | || || | || || | |||||| || || |||| | ||| || || || || || Sbjct 1584320 TGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACCACTATGGAATAAGCAAT 1584261 Query 160943 CGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAA 161002 ||||| || | || || || || | | | | | ||| |||| |||||| | || Sbjct 1584260 TGGAAATTCTGCTTCTTCATTGCTGAGAGGCTCCATAATGTATTTTCTGGTCTTGGTGAA 1584201 Query 161003 ATAATCACAATCCCGCGTCATGTTGATATA 161032 | |||| || |||||||| ||||| Sbjct 1584200 GGAGGCACAGTCTGCTGTCATGTTAATATA 1584171 >seq114 Length=360502 Score = 134 bits (148), Expect = 2e-26 Identities = 606/946 (64%), Gaps = 46/946 (5%) Strand=Plus/Minus Query 160044 CTGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAAT 160103 ||||| ||||| | || ||||| || ||| ||| |||| || | |||||| Sbjct 82644 CTGTGGCGCAGGTACTCCTCCAGGCACAGGATGGCAGCGTCGTCCACCACGGGGTCGAAC 82585 Query 160104 TTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAAC 160163 || || || || || ||||| | ||| || |||||| ||||||| || |||| | Sbjct 82584 TTGTTGGCCAAGAGGTGGTGC---TGCTGGAGCATCCAGGGCACGTCGCCCACCCCGTAG 82528 Query 160164 ACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACG 160223 | ||||||||| || |||| |||| |||| |||||||| | || || || | Sbjct 82527 ATGCAGACGGAGCGCTGGTGCTGGCCGGTGCAGGGCGGGTAGGGCGCGCCCTTGCTGGGG 82468 Query 160224 TCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCG 160283 || || || |||||||||||| || | | || | || | |||||| ||| | | Sbjct 82467 TCGCCCTCCAGGTACTGCCACTTGACCAGGCGGGGCAGGGCGTTCATGTCCGAGAGCTGG 82408 Query 160284 TATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343 | |||| || |||| | || || || || || ||||| || | ||||||||||| Sbjct 82407 AACTTGTCATTCTGGGGCAGGGAGCCTGGCACACCAGGCATGCGGTTGAGGGTGGCCCAG 82348 Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTG 160403 | ||| ||||| |||||||| |||||||| | ||| || | ||||| || | Sbjct 82347 ATGTGCTCGTCAGGGCTGTAGGTGTCCTTGGCCCACTCAAAGAACTGCAGTGTTGTGGGG 82288 Query 160404 TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463 | | | | || ||| ||| | || || | | |||||| |||| | ||| Sbjct 82287 TTCTCAAAGATGTACTGCACGAAGGCCCGTGTGACTGCGATGTACGCATTGCCCGTGAAC 82228 Query 160464 ATCGG-----TATGGGTATAGGCGGC-GTGTCTTTGT-CCTGACCGGTGTTAGACACCAC 160516 || || | |||| |||||| || ||| ||| ||| |||| || | | Sbjct 82227 ATGGGGGAGTTGTGGG--GTGGCGGCAGTTTCTCTGTGGCTGTCCGG-----GAGATGA- 82176 Query 160517 TCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGT-T 160575 | | ||| ||| | | || ||| | || |||| | || | || | | Sbjct 82175 --ACTGCCCCACTATGTGGTGATACTGCCAGCGTGCCCGCTTG-GAGGCCGAGGGCTTCT 82119 Query 160576 CCGTCTCTAGACTGTT--GGCACCGTCGAGCGATTTCA-GCTGCTTGACGATCTCTAGGT 160632 | | ||| | ||||| ||| ||| |||| |||| | ||| ||| ||||| || Sbjct 82118 CTGACTCCATGCTGTTCCGGCCCCG--CAGCGCCTTCAGGGCGCT-GACTATCTCAGCGT 82062 Query 160633 TCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCAT---TTCGCGC 160689 | ||||||| || || ||||| ||||| ||| | | || | |||| | | || Sbjct 82061 TGGTCTTGATGGGGAAATCGGTGCCGCAGGTGTTGAGGAGATAGTGCCATGGCATGGGGC 82002 Query 160690 TCAGGTCGTGCA---GGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAG 160746 || |||| ||||| |||||| || | || ||||||| ||| |||||| | Sbjct 82001 TC------TGCAACAGGTCCTGCATGCAGTTGAGGTCAGCCTGCAGCCGGGACCAGGAGG 81948 Query 160747 CGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTC 160806 | || || || || || || | |||||||||| || ||| || | ||||| Sbjct 81947 CATAGACCACCTTTTCCAGGCGGGTAGCCACAAAGATATTGGGGAAGCAGGCTACGATGG 81888 Query 160807 CCACCACCGCCAGAAAGAACATCTTATCC---GCCTTTCGGTCCACGTGCACGCAATACA 160863 || ||| ||| ||| | || || | ||| | ||| ||||| | ||| || | Sbjct 81887 CCCGCACGGCCTCCTGGAAGA---TAGCCGGGGACTTCCTGTCAACGTGGATGCAGTAGA 81831 Query 160864 GGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGA 160923 |||||| || | ||||| || ||| || | || |||||||||||| || || | |||| Sbjct 81830 CGTTCTGGGGGGTGTAGAGGGACCTCAGGAGCCGCTCGAACATCTCGATATTGTTGTGGA 81771 Query 160924 TCACGATAGAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAG 160969 | || || |||||||| || || ||||| | |||||| | ||||| Sbjct 81770 TGACCATGGAGTAGGCAATGGGGAACTCTGCCTCCTCCTGGCTCAG 81725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577068033506760