Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urile_20pelagicus_20[genbank_20GCA_5F002173435.1_202017-06-06] 20,951 sequences; 1,210,663,266 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1104 136 4e-27 seq1769 114 1e-20 >seq1104 Length=759006 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| || || || || ||||| || || ||| Sbjct 139564 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 139505 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||| ||||| ||||| || || |||||||| Sbjct 139504 GACACCATTGAGAACGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAG 139445 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||||| || |||||||| ||| | | | | |||||||| ||| Sbjct 139444 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGTACCCTCTCAGATTACAAC 139385 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || |||||||| || || ||| | ||| |||| || | || ||| Sbjct 139384 ATCCAGAAGGAATCTACTCTCCACCTTGTGCTGCGCCTGAGGGGTGGC 139337 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || ||||| || || || || ||||| || || ||| Sbjct 140477 GATGCAGATCTTTGTAAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCCAG 140418 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || ||||||||| ||||| ||||| || || |||||||| Sbjct 140417 TGACACCATTGAGAACGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCA 140358 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||||||||||| || |||||||| ||| | | | |||| || || || Sbjct 140357 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 140298 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| || |||||||| || || || | ||| |||| || | || ||| Sbjct 140297 CATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGGC 140249 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| || || || || ||||| || || ||| Sbjct 139792 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 139733 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||| ||||| ||||| || || |||||||| Sbjct 139732 GACACCATTGAGAACGTGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAG 139673 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||||| || |||||||| ||| | | | |||| || || ||| Sbjct 139672 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 139613 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || |||||||| || || || | ||| |||| || | || ||| Sbjct 139612 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGGC 139565 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| || || || || ||||| || || ||| Sbjct 140020 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 139961 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||| ||||| ||||| || || |||||||| Sbjct 139960 GACACCATTGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAG 139901 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||||| || |||||||| ||| | | | |||| || || ||| Sbjct 139900 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 139841 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || |||||||| || || || | ||| |||| || | || ||| Sbjct 139840 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGGC 139793 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| || || || || ||||| || || ||| Sbjct 140248 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 140189 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||| ||||| ||||| || || |||||||| Sbjct 140188 GACACCATTGAGAACGTGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAG 140129 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||||| || |||||||| ||| | | | |||| || || ||| Sbjct 140128 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 140069 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || |||||||| || || || | ||| |||| || | || ||| Sbjct 140068 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGGC 140021 Score = 114 bits (126), Expect = 1e-20 Identities = 151/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| || || || || ||||| || || ||| Sbjct 139336 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 139277 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||| ||||| ||||| || || |||||||| Sbjct 139276 GACACCATTGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAG 139217 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||| || || || |||||||| ||| | | | |||| || || ||| Sbjct 139216 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 139157 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || |||||||| || || || |||| Sbjct 139156 ATCCAGAAGGAATCTACTCTCCATCTTG 139129 >seq1769 Length=296722 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || || || || || ||| Sbjct 36059 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTTGAGCCCAGT 36000 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || || |||||||| ||||| ||||| || || || ||||| Sbjct 35999 GATACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 35940 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||| || || |||||||| || | | | | | || || || ||| Sbjct 35939 CAGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTTTCCGACTACAAC 35880 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || ||||||||| |||| || | || ||| Sbjct 35879 ATCCAGAAGGAGTCCACTCTGCACTTGGTGCTGCGCCTGAGGGGTGGC 35832 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || || || || || ||| Sbjct 35603 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTTGAGCCCAGT 35544 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || ||||| Sbjct 35543 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCTGATCAG 35484 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||| || || |||||||| ||| | | | | | || || || ||| Sbjct 35483 CAGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTTTCCGACTACAAC 35424 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || |||||||| || || || || ||||| |||| Sbjct 35423 ATCCAAAAGGAGTCCACCCTGCATCTGGTGCTGCG 35389 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || || || || || ||| Sbjct 35831 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTTGAGCCCAGT 35772 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || ||||| Sbjct 35771 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCTGATCAG 35712 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||| || || |||||||| || | | | | | || || || ||| Sbjct 35711 CAGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTTTCTGACTACAAC 35652 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || || ||||| |||| || | || ||| Sbjct 35651 ATCCAGAAGGAGTCCACCCTGCATCTGGTGCTGCGCCTGAGGGGTGGC 35604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449779777442280