Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urile_20pelagicus_20[genbank_20GCA_5F002173435.1_202017-06-06] 20,951 sequences; 1,210,663,266 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq5251 228 1e-53 seq2003 228 1e-53 seq680 228 1e-53 seq562 228 1e-53 seq10 187 4e-41 seq1205 147 3e-29 seq89 100 5e-15 seq10227 98.7 2e-14 seq1710 91.5 2e-12 seq2007 89.7 8e-12 >seq5251 Length=7047 Score = 228 bits (252), Expect = 1e-53 Identities = 204/256 (80%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 5875 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 5816 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || |||||||| ||||||||||| || | | ||| ||| ||||||||| | Sbjct 5815 GCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 5756 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||||||| | ||||||| |||| |||||||| || || ||||||| Sbjct 5755 GCGCCAGGCGAGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTCACGAAGGAGTTCA 5696 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 5695 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 5636 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 5635 ACACGTAGATCGAGTA 5620 >seq2003 Length=189602 Score = 228 bits (252), Expect = 1e-53 Identities = 204/256 (80%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 4835 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 4776 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || |||||||| ||||||||||| || | | ||| ||| ||||||||| | Sbjct 4775 GCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 4716 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||||||| | ||||||| |||| |||||||| || || ||||||| Sbjct 4715 GCGCCAGGCGAGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTCACGAAGGAGTTCA 4656 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 4655 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 4596 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 4595 ACACGTAGATCGAGTA 4580 >seq680 Length=3930996 Score = 228 bits (252), Expect = 1e-53 Identities = 204/256 (80%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 4145 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 4204 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || |||||||| ||||||||||| || | | ||| ||| ||||||||| | Sbjct 4205 GCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 4264 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||||||| | ||||||| |||| |||||||| || || ||||||| Sbjct 4265 GCGCCAGGCGAGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTCACGAAGGAGTTCA 4324 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 4325 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 4384 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 4385 ACACGTAGATCGAGTA 4400 >seq562 Length=113631 Score = 228 bits (252), Expect = 1e-53 Identities = 204/256 (80%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 8990 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 9049 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || |||||||| ||||||||||| || | | ||| ||| ||||||||| | Sbjct 9050 GCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 9109 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||||||| | ||||||| |||| |||||||| || || ||||||| Sbjct 9110 GCGCCAGGCGAGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTCACGAAGGAGTTCA 9169 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 9170 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 9229 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 9230 ACACGTAGATCGAGTA 9245 Score = 228 bits (252), Expect = 1e-53 Identities = 204/256 (80%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 80773 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 80714 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || |||||||| ||||||||||| || | | ||| ||| ||||||||| | Sbjct 80713 GCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 80654 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||||||| | ||||||| |||| |||||||| || || ||||||| Sbjct 80653 GCGCCAGGCGAGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTCACGAAGGAGTTCA 80594 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 80593 TGATGCTCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 80534 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 80533 ACACGTAGATCGAGTA 80518 Score = 219 bits (242), Expect = 7e-51 Identities = 202/256 (79%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| |||||||| ||| ||||||| |||||| ||| Sbjct 73426 TGTACTTGGTGACAGCCTTGGTGCCCTCGGAGACGGCATGCTTGGCCAGCTCGCCGGGCA 73485 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || |||||||| ||||||||||| || | | ||| ||| ||||||||| | Sbjct 73486 GCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 73545 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||||||| | ||||||| |||| |||||||| || || ||||||| Sbjct 73546 GCGCCAGGCGAGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTCACGAAGGAGTTCA 73605 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 73606 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 73665 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 73666 ACACGTAGATCGAGTA 73681 Score = 161 bits (178), Expect = 2e-33 Identities = 142/177 (80%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 98518 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 98577 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || |||||||| ||||||||||| || | | ||| ||| ||||||||| | Sbjct 98578 GCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 98637 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGT 1485646 |||||||||| ||||||| | ||||||| |||| |||||||| || || |||| Sbjct 98638 GCGCCAGGCGAGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTCACGAAGGAGT 98694 Score = 120 bits (132), Expect = 5e-21 Identities = 122/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 1485567 GATCGTGTTGCGCTTGTTAGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGAT 1485626 ||| ||| ||||||||| | | |||||||| ||||||| | ||||||| |||| Sbjct 98699 GATGGTGGAGCGCTTGTTGTAGTGTGCCAGGCGAGAGGCCTCGCCGGCGATGCGCTCGAA 98758 Query 1485627 CATGTCGTTGACAAACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGG 1485686 |||||||| || || ||||||||||| ||| | ||| ||||||||| |||||| Sbjct 98759 GATGTCGTTCACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGG 98818 Query 1485687 GTGCACCTGCTTGAGCACCTTGTAAACAAAGGACGAGTA 1485725 |||||||||||| ||||||||||| || || |||||| Sbjct 98819 GTGCACCTGCTTCAGCACCTTGTACACGTAGATCGAGTA 98857 >seq10 Length=229056 Score = 187 bits (206), Expect = 4e-41 Identities = 195/256 (76%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||||| |||||| ||||||| || || | | Sbjct 23870 TGTACTTGGTGACAGCCTTGGTGCCCTCCGAGACAGCGTGCTTGGCCAGCTCTCCTGGGA 23811 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||| ||||| |||| | ||| ||| |||||||| Sbjct 23810 GCAGCAGGCGCACGGCTGTCTGAATCTCCCGGGAGGTGATGGTGGATCGCTTGTTGTAAT 23751 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| ||| || ||||||| || | ||||| |||||||| ||||||| Sbjct 23750 GGGCCAGGCGGGAGGCTTCTCCAGCGATGCGCTCAAAGATGTCATTGACAAAGGAGTTCA 23691 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||||||||| |||||||| |||||||||| Sbjct 23690 TGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGGACCTGCTTTAGCACCTTGT 23631 Query 1485710 AAACAAAGGACGAGTA 1485725 | ||| || ||||| Sbjct 23630 AGACATAGATGGAGTA 23615 >seq1205 Length=448491 Score = 147 bits (162), Expect = 3e-29 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| || ||||| ||||| ||||| |||||| ||||||| |||||| ||| Sbjct 149428 TGTACTTGGTGACAGCTTTGGTGCCCTCGGAGACAGCGTGCTTGGCCAGCTCGCCGGGCA 149369 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || | |||||| ||||| | ||||||| || ||| ||| ||| | ||| || | Sbjct 149368 GCAAGAGCCTCACGGCCGTCTGCACCTCGCGGCTGGTGATGGTGGAGCGGTGGTT-GTAC 149310 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | |||||||| |||||| | | | | || |||| ||||| ||||| || |||||| Sbjct 149309 TGGGCCAGGCGCGAGGCCTCCGAGGCCAGCCGCTCGAAGATGTCATTGACGAAGGAGTTC 149250 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGC 1485696 ||||| ||| | || ||||||||| ||| |||||||||||| Sbjct 149249 ATGATGCTCATGGCCTTAGAGGAGATGCCAGTGTCTGGGTGCACCTGC 149202 >seq89 Length=3357968 Score = 100 bits (110), Expect = 5e-15 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 796303 ACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGG 796362 |||||||| || ||||| ||||||||||||||||| |||||||||| ||| || ||| Sbjct 2806667 ACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTGG 2806608 Query 796363 TAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 || |||||||||| | || ||||| |||||| || || | ||||||||| Sbjct 2806607 TACTGGATGGGGAAGATGACGAAGCGGCGGGGGTTGTCCCGCAACAGCGGCTC 2806555 >seq10227 Length=354 Score = 98.7 bits (108), Expect = 2e-14 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 1485567 GATCGTGTTGCGCTTGTTAGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGAT 1485626 ||| ||| ||||||||| | | |||||||| ||||| ||||||| |||| Sbjct 343 GATGGTGGAGCGCTTGTTGTAGTGAGCCAGGCGCGAAGCCTCCCCCGCGATGCGCTCGAA 284 Query 1485627 CATGTCGTTGACAAACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGG 1485686 ||||||||||| || || |||||||| ||| | || |||||||||| |||||| Sbjct 283 GATGTCGTTGACGAAGGAATTCATGATGCCCATGGCCTTAGAGGAGATGCCCGTGTCGGG 224 Query 1485687 GTGCACCTGCTTGAGCACCTTGTAAAC 1485713 |||||| ||||| ||||||||||| || Sbjct 223 GTGCACTTGCTTCAGCACCTTGTACAC 197 >seq1710 Length=4453 Score = 91.5 bits (100), Expect = 2e-12 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 431022 CCCGAGAGCCGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCGAGATG 431081 ||||||||||| || || ||| ||||| ||| | |||||||| | | |||| | Sbjct 742 CCCGAGAGCCGGGGGTTCGTGGAGAACTCCTACCTGGCCGGCCTCACCCCCACCGAGTTC 683 Query 431082 TTTCTGCACATGATCGGCGGGCGCGAGGGTCTCGTCGACACGGCCGTCAAGACGGCCGAG 431141 || | ||| || ||||| |||||||| ||| ||||||| |||||||||||||||||| Sbjct 682 TTCTTCCACGCCATGGGCGGCCGCGAGGGGCTCATCGACACCGCCGTCAAGACGGCCGAG 623 Query 431142 ACGGG 431146 || || Sbjct 622 ACCGG 618 >seq2007 Length=13708 Score = 89.7 bits (98), Expect = 8e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 429061 AGCGATTCAAGGGCAAGGAGGGCCGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAACT 429120 |||| | ||||| ||||| || ||| | || ||||| |||||||||||| || | | Sbjct 3902 AGCGGCTGAAGGGGAAGGAAGGGCGGGTGCGGGGCAACCTCATGGGCAAGCGGGTGGATT 3961 Query 429121 TTACGGCGCGCGCCGTCATCAGTCCCGACCCCGAAATCGACATTGACGAGGTGGGCGTGC 429180 | |||||||| ||||||||| ||||||||| | | | ||| ||| |||||||||| | Sbjct 3962 TCTCGGCGCGCACCGTCATCACCCCCGACCCCAACCTGGCCATCGACCAGGTGGGCGTCC 4021 Query 429181 CC 429182 || Sbjct 4022 CC 4023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7914017746572489