Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urile_20pelagicus_20[genbank_20GCA_5F002173435.1_202017-06-06] 20,951 sequences; 1,210,663,266 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1287 102 6e-16 seq58 95.1 9e-14 seq427 87.8 1e-11 >seq1287 Length=783258 Score = 102 bits (112), Expect = 6e-16 Identities = 277/418 (66%), Gaps = 6/418 (1%) Strand=Plus/Minus Query 281424 CGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGA 281483 ||||| | || || || |||||||||||||| | ||||| ||||| || || || |||| Sbjct 256672 CGGCACTGACGTTCAGGATACCATTGGCATCGATGTCAAAGGTGACCTCGATCTGGGGGA 256613 Query 281484 CCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTT 281543 | || | | || || ||||| ||| | | |||| | ||||| || || || | Sbjct 256612 CTCCACGGGGTGCCGGGGGGATGCCTGTTAGGTCAAATTTGCCCAGCAAGTTGTTGTCCT 256553 Query 281544 TAGTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTAA-CTACAGTTTGATTATCTGA 281601 | || | | ||||||||| | | |||| || | || | | || || ||||| Sbjct 256552 TCGTCATAGCCCTCTCACCCTCGTACACCTGGACCAGGACGCTGC--TCTGGTTGTCTGA 256495 Query 281602 ATAAGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATAT 281660 || || || || |||| ||| ||| |||||| || ||||| | | || | | Sbjct 256494 GTAGGTGGTGAAGG-TCTGAGTTTGTTTGGTAGGAATGGTGGTGTTGCGCTTGATGAGAG 256436 Query 281661 TGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGA 281720 ||||| | ||||| ||||| || | || || || ||||| |||||||| | || | Sbjct 256435 CAGTCATCACTCCACCGGCTGTCTCGATGCCCAGGGACAGAGGGGTGACATCCAACAGCA 256376 Query 281721 CAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCAC 281780 | || || | || ||| | | || | || ||||||||||| | |||||| | Sbjct 256375 GCAGATCCTGCACATTCTCAGACTTGTCTCCCATGAGGATAGCTGCTTGCACAGCAGCGC 256316 Query 281781 CATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAA 281838 | || |||||||| ||||| ||||| | | | || || | ||| |||||||| || Sbjct 256315 CGTAAGCAACAGCCTCATCGGGATTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAA 256258 >seq58 Length=248746 Score = 95.1 bits (104), Expect = 9e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 131180 GTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCAT 131239 || || ||| | ||||| || ||||| || || ||| | ||| | | | ||||||||| Sbjct 166583 GTGGCTACAGTGGCATTCGGAATGGGCATCAACAAAGCAGATATCCGGATGGTTATTCAT 166524 Query 131240 TACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGAT 131299 ||||| || || ||| | || ||| ||||||||||||||||| ||||| ||||||||| Sbjct 166523 TACGGTGCCCCTAAGGAAATGGAATCCTATTATCAAGAAATTGGGAGAGCTGGTCGTGAT 166464 Query 131300 GG 131301 || Sbjct 166463 GG 166462 >seq427 Length=1578491 Score = 87.8 bits (96), Expect = 1e-11 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427 || |||||||||||||||| ||||| | ||||||||| | || |||||||| || || Sbjct 1127746 GGCTCATTAATAATTCTCATCACATTCAACCCAGCAATTGTCCCAGCATCTTTTGTAGCC 1127687 Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 || | || | ||||||||| || || || ||||||| ||| |||| Sbjct 1127686 TGACGCTGAGCATCGTTAAAGTAGGCTGGCACAGTAACAACAGCAT 1127641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739601794438926