Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urile_20pelagicus_20[genbank_20GCA_5F002173435.1_202017-06-06] 20,951 sequences; 1,210,663,266 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq221 165 9e-36 seq114 123 3e-23 >seq221 Length=1754029 Score = 165 bits (182), Expect = 9e-36 Identities = 584/903 (65%), Gaps = 22/903 (2%) Strand=Plus/Minus Query 162160 ATCCAATTAAGATCCCCCGATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCAC 162219 ||||| || || || || || || || || || || || ||||| || || ||||| Sbjct 1585066 ATCCAGTTCAGGTCTCCTACCCCAAAAACACAGACAGAGCGAACGTGAACTCCACTGCAT 1585007 Query 162220 GGCGGATACAGGGCCCCATCGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTA 162279 || || || | || || | | ||| || || || |||| |||||||| || ||||| Sbjct 1585006 GGTGGGTAAGGTGCACCCTTGGACACGTCACCTTCAAAGTACTGCCACTTGACAAACCTG 1584947 Query 162280 GTGATAGCCTGCATGTCGGAGGTGTCGTACTTGTACACT-GACGGCACGGCTCCAGGAAC 162338 | | || | |||||| || ||| ||||||| |||| || | ||| || || || || Sbjct 1584946 GCCAGTGCATTCATGTCAGAAACGTCATACTTGT-CACTAGAAGACACTGCACCTGGGAC 1584888 Query 162339 ACCCGGCAGTCTCTGTAGAGTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGA 162398 | || | |||||| | || ||||| | || ||| ||||| || || || || || | Sbjct 1584887 TTCAGGGATTCTCTGAATTGTTGCCCATAAGTATTCATCTGGGCTGTAAGTATCTTTTGC 1584828 Query 162399 CCACTCCATGAACTCCCTGACCGTTTTATCGTATAG-AAT--GTAAGAGACGTAGGACCT 162455 |||||| || |||| | || |||| | | | ||| ||| || | || Sbjct 1584827 CCACTCAATTAACT---TAACTATTTTGCTGCTTTGTAATACGTATTCTACAAATCTTCT 1584771 Query 162456 GGTCACAATAAAGTACGCGCTACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTT 162515 | | |||| ||| || || ||||||||||| | || | | | ||| || ||| ||| Sbjct 1584770 GCTAACAACAAAATAGGCACTACCAGAAAAAATTGGAGTACTGAGAGGTGGTAGCTGTTT 1584711 Query 162516 GTCTTGACCCGTGTTGACTACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGC 162575 |||| || ||||| || | || || | | | | || || ||||||| | Sbjct 1584710 GTCTATGCCTGTGTTTTTTATTTTACCATCAATAATCTCATGGTGTTTTTTCCACCTTAC 1584651 Query 162576 CATCTTACTGGTAGACGGG----TGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCT 162631 ||| || || || | ||| || || | ||||| ||| | ||| | Sbjct 1584650 TTCTTTA----TAAACAGGCATTTTTTCCGTTTCCAAGCTGTTTTCACCTTTAAGGGCTT 1584595 Query 162632 TCAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAA 162691 | | | || || || | |||||||| | |||||||| |||| ||||| || | Sbjct 1584594 TTAATTTCTCTACTATTTCCTGGTTGGTCTTTATAGGAAAGTCCATGCCACAGAGGTTTA 1584535 Query 162692 TAACATATTTCCACTTAACGCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCT 162751 | | |||||||| || || || || ||||| | | ||||| | || |||| Sbjct 1584534 TCAGGTATTTCCAGTTTGAACTTCTTCTGTGGAGATCTTTCATGCAGTTAATGTCTGCCT 1584475 Query 162752 GGACGCGACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGT 162811 | ||||| ||||| || || || || || ||||| ||| ||| | ||||||||| | Sbjct 1584474 GCACGCGGCTCCAGGAAGCATATACAACACTCTCTAACTGGCTGGAAATAAAGACATTAT 1584415 Query 162812 CGAAACACGAAACTATCCCCATCACGGCCAGTGAGAACA---TCGGGTCCGCTTTCCTAT 162868 | ||||| || ||||| ||| |||| || || | || | || || ||| | | Sbjct 1584414 CAAAACATGAGACTATTCCCTTCACAGC-AGCAAAAAAAGATTCTGGAGACTTTT--TGT 1584358 Query 162869 CTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACA 162928 | || || | |||||| | |||||||||||| ||||| | || || | ||| || | || Sbjct 1584357 CAACATGAATGCAGTAAAAATTCTGAGGGGCATAGATTGATCTTAGAAGTCTATCAAGCA 1584298 Query 162929 TCTCTATCTTATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGAC 162988 |||| || || || | ||||| || ||||| || || || || || || || || | Sbjct 1584297 TCTCAATTTTGTGATAAACCACTATGGAATAAGCAATTGGAAATTCTGCTTCTTCATTGC 1584238 Query 162989 TGAGAGACCCTGTAAAGTACTTGCGGTCCCTCACAAACGCCGCACAGTCCTCCGTCATGT 163048 |||||| | | ||| ||| || | | | | || | |||||||| | ||||||| Sbjct 1584237 TGAGAGGCTCCATAATGTATTTTCTGGTCTTGGTGAAGGAGGCACAGTCTGCTGTCATGT 1584178 Query 163049 TAA 163051 ||| Sbjct 1584177 TAA 1584175 >seq114 Length=360502 Score = 123 bits (136), Expect = 3e-23 Identities = 259/380 (68%), Gaps = 12/380 (3%) Strand=Plus/Minus Query 162610 CTGTTACGACCCCCCAAGGCCTTCAGCTGACGC--ACCATCTCTAGATTGGTCTTAAGGG 162667 ||||| || |||| || |||||||| | ||| || ||||| |||||||| | || Sbjct 82107 CTGTTCCGGCCCCGCAGCGCCTTCAG--GGCGCTGACTATCTCAGCGTTGGTCTTGATGG 82050 Query 162668 GAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTCCGTA-CAGA 162726 | || |||||||||||| || | | ||| | ||| | | | || | | ||| Sbjct 82049 GGAAATCGGTGCCGCAGGTGTTGAGGAGATAGTGCCATGGCATGGGGC-TCTGCAACAGG 81991 Query 162727 TCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCTCC 162786 ||||| | ||||| || || ||||| | || ||| || || || || || | ||| Sbjct 81990 TCCTGCATGCAGTTGAGGTCAGCCTGCAGCCGGGACCAGGAGGCATAGACCACCTTTTCC 81931 Query 162787 AACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGTGAG 162846 | | || || ||||||| |||| ||| || | || || || ||||||| | Sbjct 81930 AGGCGGGTAGCCACAAAGATATTGGGGAAGCAGGCTACGATGGCCCGCACGGCCTCCTGG 81871 Query 162847 AACAT---CGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAG 162903 || || |||| | ||||| || ||||| | |||||| | ||||| |||| |||| Sbjct 81870 AAGATAGCCGGGGAC---TTCCTGTCAACGTGGATGCAGTAGACGTTCTGGGGGGTGTAG 81814 Query 162904 ATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGCT 162963 | || |||||| | | |||||||||||| || || | ||| | || || || || || Sbjct 81813 AGGGACCTCAGGAGCCGCTCGAACATCTCGATATTGTTGTGGATGACCATGGAGTAGGCA 81754 Query 162964 ATGGGGAACTCAGCCTCCTC 162983 ||||||||||| |||||||| Sbjct 81753 ATGGGGAACTCTGCCTCCTC 81734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578280515889600