Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urile_20pelagicus_20[genbank_20GCA_5F002173435.1_202017-06-06] 20,951 sequences; 1,210,663,266 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq251 132 6e-26 >seq251 Length=518122 Score = 132 bits (146), Expect = 6e-26 Identities = 126/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 32670 GCCTTGTGGTTATATTTTATCTCTAAAGGTATAGAATATCTAGATACTATTTTCTTCATA 32729 || || |||| |||| | |||||||||| || |||||| | ||||| | |||||||| Sbjct 301345 GCTTTATGGTGGTATTATGTCTCTAAAGGAATTGAATATTTGGATACAGTATTCTTCATC 301286 Query 32730 ATGAGAAAGAAATTTAACCAAGTTAGCTTTTTGCACGTATACCACCATTTTACCATGTTT 32789 |||| ||||||||||||||| |||| || | || || || |||||||| |||||||| Sbjct 301285 CTGAGGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 301226 Query 32790 ACTTTAGGATGGATAGGGATTAAATGGTTTGCAGGAGGACA 32830 || || | ||||| || ||||| ||| ||||||| ||||| Sbjct 301225 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACA 301185 Score = 82.4 bits (90), Expect = 9e-11 Identities = 100/135 (74%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 32826 GGACAGGCATTTTTTGGAGCACAGATAAATTCTTTTATACATGTTATAATGTATAGTTAT 32885 |||||| | ||||||||||| ||||| ||| | ||||| ||||| || ||||| | ||| Sbjct 298960 GGACAG-CTTTTTTTGGAGCTCAGATGAATGCGTTTATTCATGTCATTATGTACATGTAT 298902 Query 32886 TACGGATTAACAGCAATAGGTCCTTCCTTGCGAAAATATCTATGGTGGAAAAAATATTTA 32945 ||||||||| | || || ||| || | ||||| || ||||||||| ||| || Sbjct 298901 TACGGATTAGCTGCCTGTGGCCCTAAATTTCAGAAATACCTGTGGTGGAAACGATACTTG 298842 Query 32946 ACTATCATACAATTG 32960 || || | |||||| Sbjct 298841 ACCATATTGCAATTG 298827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603022834488240