Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urile_20pelagicus_20[genbank_20GCA_5F002173435.1_202017-06-06] 20,951 sequences; 1,210,663,266 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq114 212 8e-50 seq269 147 3e-30 >seq114 Length=360502 Score = 212 bits (234), Expect = 8e-50 Identities = 660/1004 (66%), Gaps = 46/1004 (5%) Strand=Plus/Plus Query 13611 TACGTGAACATGACGGCCGACTGCGTGGCCTTCGTGAAAGACAGGGGGTATCTCGT-GAG 13669 ||| ||||||||||| |||||| | |||| || || | | || | || | ||| Sbjct 81662 TACCTGAACATGACGAAGGACTGCAGGAGCTTC---AAGGAGACGCGGCAGTTCATCGAG 81718 Query 13670 GCCCC--TGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCAC 13727 ||| |||||| ||| |||| ||||| ||||| |||||||| || || |||||| || Sbjct 81719 TTCCCGCTGAGCCAGGAGGAGGCAGAGTTCCCCATTGCCTACTCCATGGTCATCCACAAC 81778 Query 13728 AAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGC 13787 || ||||||||||||||||| ||||||||| || ||||| |||| |||||| |||||||| Sbjct 81779 AATATCGAGATGTTCGAGCGGCTCCTGAGGTCCCTCTACACCCCCCAGAACGTCTACTGC 81838 Query 13788 GTCCACGTGGACTCCAAGTCCGGCGACGAGTTCATCC---GGGGCGTCTCGGCCATCGCC 13844 ||||||| ||| |||||| || | | || ||| || ||| |||||||| Sbjct 81839 ATCCACGTTGACAGGAAGTCC-CCGGCTA--TCTTCCAGGAGGCCGTGCGGGCCATCGTA 81895 Query 13845 AGGTGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGG 13904 |||||||| || | |||| ||| ||| | | ||||| || | ||||||| Sbjct 81896 GCCTGCTTCCCCAATATCTTTGTGGCTACCCGCCTGGAAAAGGTGGTCTATGCCTCCTGG 81955 Query 13905 AGTCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTG--GACGCCTCCCCCGTCAAGT 13962 || ||||||| ||||||| ||||||| ||||||| | | ||| | || | Sbjct 81956 TCCCGGCTGCAGGCTGACCTCAACTGCATGCAGGACCTGTTGCAGAGCCCCATGCCA--T 82013 Query 13963 GGAGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCG 14022 || || || |||||| ||||| | || ||||| ||||||||||| ||||| | Sbjct 82014 GGCACTATCTCCTCAACACCTGCGGCACCGATTTCCCCATCAAGACCAACGCTGAGATAG 82073 Query 14023 TGCGGGCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAG--AGCGAGGGCAT--GC-- 14076 | | || |||||||| ||| | ||| |||| | ||||| || || | | | || Sbjct 82074 TCAGCGCCCTGAAGGCGCTGCGGGGCCGGAACAGCATGGAGTCAGAGAAGCCCTCGGCCT 82133 Query 14077 CCAACC--ACAAGCTGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGT 14134 |||| | || |||| | | |||| ||| | |||| ||| | | | Sbjct 82134 CCAAGCGGGCACGCTG-GCAGTATCA-------CCACATAGTGG-----GGCAG-TTCAT 82179 Query 14135 GGTCAACACCGGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAA 14194 | || | || | || ||||| || | || |||||| || |||| || Sbjct 82180 CTCCCGGACAGCCACAGAGAAACTGCCGCCACCCCACAACTCCCCCATGTTCACGGGCAA 82239 Query 14195 CGCTTACTTTGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGC 14254 || ||| | || ||||| |||| |||||| | | | || | || || || | Sbjct 82240 TGCGTACATCGCAGTCACACGGGCCTTCGTGCAGTACATCTTTGAGAAC---CCCACAAC 82296 Query 14255 CCTGC---TCATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCAC 14311 |||| || | | ||| | ||||||| |||||||| ||||||||| | |||||||| Sbjct 82297 ACTGCAGTTCTTTGAGTGGGCCAAGGACACCTACAGCCCTGACGAGCACATCTGGGCCAC 82356 Query 14312 CGTGCAGAGAATGTACGGGACGCCCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTC 14371 | | | | ||| || ||| || | ||| | | ||||| | | ||| Sbjct 82357 CCTCAACCGCATGCCTGGTGTGCCAGGCTCCCTGCCCCAGAATGACAAGTTCCAGCTCTC 82416 Query 14372 GGACATGTGGGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAA 14431 ||||||| ||| | | | | ||||||||||| ||| ||||| || || || Sbjct 82417 GGACATGAACGCCCTGCCCCGCCTGGTCAAGTGGCAGTACCTGGAGGGCGACCCCAGCAA 82476 Query 14432 AGGGGCCCTGTACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTC 14491 || || | |||||||| ||| |||| ||| | | || ||||||||| |||| Sbjct 82477 GGGCGCGCCCTACCCGCCCTGCACCGGCCAGCACCAGCGCTCCGTCTGCATCTACGGGGT 82536 Query 14492 CGGCGACGTGAAGTGGCTG-AAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGACGACG 14550 ||||||||| ||| || ||| | | ||||| || ||||||||||||||| || Sbjct 82537 GGGCGACGTGCCCTGGATGCTCCAGCAGCAC-CACCTCTTGGCCAACAAGTTCGACCCCG 82595 Query 14551 AGACGGACGAGTTCGCCGTGCGCTGTCTGGACGAGGACGTGCGC 14594 | |||||| ||| | | || ||||| ||| || ||||| Sbjct 82596 TGGTGGACGACGCTGCCATCCTGTGCCTGGAGGAGTACCTGCGC 82639 >seq269 Length=4904497 Score = 147 bits (162), Expect = 3e-30 Identities = 431/651 (66%), Gaps = 41/651 (6%) Strand=Plus/Minus Query 13682 GGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGA---TCGAGAT 13738 ||| |||| || || ||||| |||||| ||| ||| || |||||| | |||| Sbjct 156095 GGAGGAGGCCGCCTTCCCCATTGCCTAC---ATCATGACCCTGCACAAGGAGTTTGAGAC 156039 Query 13739 GTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGA 13798 |||||||| ||| | ||||| | ||| || || ||| |||||||| |||| ||||| Sbjct 156038 CTTCGAGCGGCTCTTCAGGGCGGTGTACATGCCCCAAAACATCTACTGCATCCATGTGGA 155979 Query 13799 CTCCAAGTC--CGGCGACGAGTTCATCCGG--GGCGTCTCGGC-CATCGCCAGGTGCTTC 13853 | ||||| | |||| | | ||||| |||| |||| | | | | |||||| Sbjct 155978 CACCAAGGCACCGGCCCC-----CTTCCGGCAGGCGGTGCGGCGCCTGGTGGGCTGCTTC 155924 Query 13854 CCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTG 13913 || |||| ||| ||| |||| | | ||||| |||||| | ||| || Sbjct 155923 CCCAACGCCTTCCTCGCCTCCCGGGCGGAGCGGGTGGTCTACGGCGGCGCCTCCCGCCTG 155864 Query 13914 CAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTG 13973 | |||||||||| ||||||| |||||| ||||| |||| ||| | |||||| Sbjct 155863 CGGGCCGACCTCCACTGCATGAGAGACCTGCTGGCCTCGGCCGTGCCCTGGCGCTACCTG 155804 Query 13974 CTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTG 14033 |||||| ||||| ||||||||| | |||||||||| ||||||||| | | ||| Sbjct 155803 CTCAACACCTGCGGCCAGGACTTCCCCTTGAAGACCAACCGGGAGATCGTCCAGCTGCTC 155744 Query 14034 AAGGCCCTGGGCGGCAAGAAC----GCCCTGGAGAGCGAGGGCATGCCCAACCACA-AGC 14088 |||| | | || || |||||| |||||| | || | || ||| ||||| | Sbjct 155743 AAGGGCTTTGGGGGGAAGAACATCACCCCTGGGGTGC--TGCCA--CCCCCCCACATCAC 155688 Query 14089 TGCACCGCATCAGGAAGAGGCAC---GTGGTGGCCAG------CGGCGGCGTGGTGGTCA 14139 ||| ||||| | | |||| | || |||||| || | | | || ||| Sbjct 155687 TGC-CCGCACAAAATATGTGCACAGGGAGGGGGCCAGGTACAACGCCTCGGGGCTGATCA 155629 Query 14140 ACACCGGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTT 14199 | || || | ||||||| || ||||| | || || | |||| || || | Sbjct 155628 CCCCCTGCCTGCACAAGGCACCCCCGCCCCACAACATGACGATCTACTTTGGCTCTGCGT 155569 Query 14200 ACTTTGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGC---CGGTGGCCC 14256 || |||| ||||||||| |||||||| || || || ||||| | | | | | | Sbjct 155568 ACATTGCTGTCACCCGGCCCTTCGTGGAGTTTGTGCTGCAGGACCAACGCGCCATCGATC 155509 Query 14257 TGCTCATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGG 14307 |||| ||| |||| ||||||||| |||||||| || |||||| | |||| Sbjct 155508 TGCT--GGCA-TGGTCCGAGGACACCTACAGCCCTGATGAGCACTTCTGGG 155461 Score = 132 bits (146), Expect = 6e-26 Identities = 260/380 (68%), Gaps = 16/380 (4%) Strand=Plus/Minus Query 13683 GAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGA---TCGAGATG 13739 || |||| || || ||||| |||||| ||| ||| || |||||| | |||| Sbjct 167500 GAGGAGGCCGCCTTCCCCATTGCCTAC---ATCATGACCCTGCACAAGGAGTTTGAGACC 167444 Query 13740 TTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGAC 13799 |||||||| ||| | ||||| | ||| || || ||| |||||||| |||| |||||| Sbjct 167443 TTCGAGCGGCTCTTCAGGGCGGTGTACATGCCCCAAAACATCTACTGCATCCATGTGGAC 167384 Query 13800 TCCAAGTC--CGGCGACGAGTTCATCCGG--GGCGTCTCGGC-CATCGCCAGGTGCTTCC 13854 ||||| | |||| | | ||||| |||| |||| | | | | ||||||| Sbjct 167383 ACCAAGGCACCGGCCCC-----CTTCCGGCAGGCGGTGCGGCGCCTGGTGGGCTGCTTCC 167329 Query 13855 CTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGC 13914 | |||| ||| ||| |||| | | ||||| |||||| | ||| ||| Sbjct 167328 CCAACGCCTTCCTCGCCTCCCGGGCGGAGCGGGTGGTCTACGGCGGCGCCTCCCGCCTGC 167269 Query 13915 AGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGC 13974 |||||||||| ||||||| |||||| ||||| |||| ||| | ||||||| Sbjct 167268 GGGCCGACCTCCACTGCATGAGAGACCTGCTGGCCTCGGCCGTGCCCTGGCGCTACCTGC 167209 Query 13975 TCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGA 14034 ||||| ||||| ||||||||| | |||||||||| ||||||||| | | ||| | Sbjct 167208 TCAACACCTGCGGCCAGGACTTCCCCTTGAAGACCAACCGGGAGATCGTCCAGCTGCTCA 167149 Query 14035 AGGCCCTGGGCGGCAAGAAC 14054 ||| | | || || |||||| Sbjct 167148 AGGGCTTTGGGGGGAAGAAC 167129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658566684437760