Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urile_20pelagicus_20[genbank_20GCA_5F002173435.1_202017-06-06] 20,951 sequences; 1,210,663,266 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq407 118 9e-22 seq182 89.7 4e-13 >seq407 Length=1283089 Score = 118 bits (130), Expect = 9e-22 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || |||||||||||||| ||||| |||||||| | ||||| || ||||| ||| Sbjct 215108 GTGGTGGAAGAGCTCTTCCGAGACGGGGTTAACTGGGGCAGGATTGTGGCCTTCTTCGAG 215167 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || || || || ||||||||||| |||||||| | | || | ||||||| |||| | Sbjct 215168 TTCGGCGGCGTGATGTGTGTGGAGAGCGTCAACCGGGAGATGTCTCCCCTCGTGGACAGC 215227 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||||| |||||||| || Sbjct 215228 ATCGCCGCCTGGATGACCGA 215247 >seq182 Length=5234274 Score = 89.7 bits (98), Expect = 4e-13 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 ||||| || | || |||||||||||||| | || |||||||| | ||| ||||| Sbjct 1130726 AGCCCCGTGACATGGGCAATCATGTATGTAAGCAGTGAATAGCTGGCAATATTGAAAGGC 1130785 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 || ||||| ||||| ||| | || ||||| || | |||||| || | || || ||| | Sbjct 1130786 ACTCCCAGTCCCATATCTCCAGACCTCTGATAGAGTTGGCACGACAATTCACCATTTAGA 1130845 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATG 118695 ||||| ||||| | | || |||||||||| | ||||| Sbjct 1130846 ACATAGAACTGGCAAAGAGCATGGCATGGAGGCAAAGCCATG 1130887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414370967364364