Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urile_20pelagicus_20[genbank_20GCA_5F002173435.1_202017-06-06] 20,951 sequences; 1,210,663,266 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1769 109 4e-19 seq1104 98.7 7e-16 >seq1769 Length=296722 Score = 109 bits (120), Expect = 4e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| || || || ||||| ||||| || || ||||| || || ||||| || Sbjct 36062 AAAATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTTGAGCCC 36003 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || || |||||| | || || || ||||| ||||| | || || ||| Sbjct 36002 AGTGATACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGAT 35943 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | || || ||||| ||||| || |||||||||| ||||| | ||| ||| Sbjct 35942 CAGCAGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTTTCCGACTAC 35883 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || |||||||| Sbjct 35882 AACATCCAGAAGGAGTCCAC 35863 >seq1104 Length=759006 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || || || || ||||| ||||| || || ||| Sbjct 140020 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 139961 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || |||| | | ||||| ||||| | || || ||||| Sbjct 139960 GACACCATTGAGAATGTGAAGGCAAAGA-TCCAGGACAAGGAAGGCATTCCCCCCGATCA 139902 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||||||||| || |||||||| | ||||| | ||| ||||| Sbjct 139901 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 139842 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || ||||| Sbjct 139841 CATCCAGAAGGAATCCAC 139824 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || || || || ||||| ||||| || || ||| Sbjct 139792 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 139733 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | ||| || || ||||| ||||| | || || ||||| Sbjct 139732 GACACCATTGAGAACGTGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAG 139673 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||||||||| || |||||||| | ||||| | ||| |||||| Sbjct 139672 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 139613 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || ||||| Sbjct 139612 ATCCAGAAGGAATCCAC 139596 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || || || || ||||| ||||| || || ||| Sbjct 140248 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 140189 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | ||| || || ||||| ||||| | || || ||||| Sbjct 140188 GACACCATTGAGAACGTGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAG 140129 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||||||||| || |||||||| | ||||| | ||| |||||| Sbjct 140128 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 140069 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || ||||| Sbjct 140068 ATCCAGAAGGAATCCAC 140052 Score = 95.1 bits (104), Expect = 8e-15 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || || ||||| || || || || ||||| ||||| || || || Sbjct 140479 AAGATGCAGATCTTTGTAAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCC 140420 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| |||| | | || ||| || ||||| ||||| | || || ||| Sbjct 140419 AGTGACACCATTGAGAACGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCCGAT 140360 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||||||||| || |||||||| | ||||| | ||| ||| Sbjct 140359 CAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTAC 140300 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || || ||||| Sbjct 140299 AACATCCAGAAGGAATCCAC 140280 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || || || || ||||| ||||| || || ||| Sbjct 139564 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 139505 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || ||| || ||||| ||||| | || || ||||| Sbjct 139504 GACACCATTGAGAACGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAG 139445 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||||||||| || |||||||| | || || | ||||||||| Sbjct 139444 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGTACCCTCTCAGATTACAAC 139385 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || || || Sbjct 139384 ATCCAGAAGGAATCTAC 139368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337923292523108