Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urile_20pelagicus_20[genbank_20GCA_5F002173435.1_202017-06-06] 20,951 sequences; 1,210,663,266 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1104 150 4e-31 seq1769 123 6e-23 >seq1104 Length=759006 Score = 150 bits (166), Expect = 4e-31 Identities = 148/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| ||||| |||||||| ||||| || |||| ||||| |||| || || | ||||| Sbjct 139124 CAGAACAAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 139183 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||||||||| || | || || ||||| ||||| ||||||||||| Sbjct 139184 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTC 139243 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||||||| ||||||| || |||||||| || || || || | ||||| || Sbjct 139244 CTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGT 139303 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 139304 CTTGCCGGTCA 139314 Score = 141 bits (156), Expect = 2e-28 Identities = 146/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| ||||| ||||| |||||||| || |||| ||||| |||| || || | ||||| Sbjct 139808 CAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 139867 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| || | || || ||||| ||||| ||||||||||| Sbjct 139868 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTC 139927 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||||||| ||||||| || |||||||| || || || || | ||||| || Sbjct 139928 CTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGT 139987 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 139988 CTTGCCGGTCA 139998 Score = 141 bits (156), Expect = 2e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| ||||| ||||| |||||||| || |||| ||||| |||| || || | ||||| Sbjct 140264 CAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 140323 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| || | || || ||||| ||||| ||||||||||| Sbjct 140324 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTC 140383 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||||||| |||||| || |||||||| || || || || | ||||| || Sbjct 140384 CTGGATCTTTGCCTTCACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGT 140443 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||| |||| || |||| || | ||||| || Sbjct 140444 CTTGCCGGTCAGGGTCTTTACAAAGATCTGCATCTT 140479 Score = 138 bits (152), Expect = 3e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| |||||||||||||| ||||| || |||| |||||||| | | || | ||||| Sbjct 139352 CAGCACAAGGTGGAGAGTAGATTCCTTCTGGATGTTGTAATCTGAGAGGGTACGACCATC 139411 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| || | || || ||||| ||||| ||||||||||| Sbjct 139412 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTC 139471 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||||||| |||||| || |||||||| || || || || | ||||| || Sbjct 139472 CTGGATCTTTGCCTTCACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGT 139531 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 139532 CTTGCCGGTCA 139542 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| ||||| ||||| |||||||| || |||| ||||| |||| || || | ||||| Sbjct 139580 CAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 139639 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| || | || || ||||| ||||| ||||||||||| Sbjct 139640 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTC 139699 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||||| || |||||||| || || || || | ||||| || Sbjct 139700 CTGGATCTTGGCTTTCACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGT 139759 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 139760 CTTGCCGGTCA 139770 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| ||||| ||||| |||||||| || |||| ||||| |||| || || | ||||| Sbjct 140036 CAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 140095 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| || | || || ||||| ||||| ||||||||||| Sbjct 140096 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTC 140155 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||||| || |||||||| || || || || | ||||| || Sbjct 140156 CTGGATCTTGGCTTTCACGTTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGT 140215 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 140216 CTTGCCGGTCA 140226 >seq1769 Length=296722 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || || || || ||||| || ||||||| ||||| |||| | || | |||||| Sbjct 35391 CAGCACCAGATGCAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGCCCATC 35450 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| ||||| | | || || || |||||||| || |||||||| Sbjct 35451 TTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCAGGCGGAATGCCCTCCTTGTC 35510 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| ||| || |||||||| || || || || | ||||| || Sbjct 35511 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGT 35570 Query 225681 CTTGCCCGTCA 225691 ||||||||||| Sbjct 35571 CTTGCCCGTCA 35581 Score = 123 bits (136), Expect = 6e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || | ||| |||||||| || || |||| ||||| |||| | || | ||| || Sbjct 35847 CAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGCCCGTC 35906 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| ||||| | | || || || || ||||| ||||||||||| Sbjct 35907 TTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCAGGGGGAATGCCTTCCTTGTC 35966 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| ||| ||| ||||| || || || || || | ||||| || Sbjct 35967 CTGGATCTTGGCCTTGACATTTTCAATGGTATCACTGGGCTCAACCTCCAGGGTGATGGT 36026 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||||||||| || || | || | |||||||| Sbjct 36027 CTTGCCCGTCAGGGTCTTCACAAAGATCTGCATTTT 36062 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || || || || ||||| || || |||| ||||| || | | || | ||| || Sbjct 35619 CAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTGCGCCCGTC 35678 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| ||||| | | || || || |||||||| || |||||||| Sbjct 35679 TTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGATCAGGCGGAATGCCCTCCTTGTC 35738 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| ||| || |||||||| || || || || | ||||| || Sbjct 35739 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGT 35798 Query 225681 CTTGCCCGTCA 225691 ||||||||||| Sbjct 35799 CTTGCCCGTCA 35809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192211083259994