Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urile_20pelagicus_20[genbank_20GCA_5F002173435.1_202017-06-06] 20,951 sequences; 1,210,663,266 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq89 111 2e-19 seq1225 102 1e-16 seq645 89.7 7e-13 >seq89 Length=3357968 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||||||||| || | ||| |||||||| ||||| || ||||||| ||| | ||| || Sbjct 2809615 TCATCTCTACTGATAAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 2809556 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 |||||||| |||| || ||||| ||||||||||| || ||||| || || ||||| || Sbjct 2809555 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAAATTCCTTCCACTGCTGCAAAAGC 2809497 Score = 95.1 bits (104), Expect = 2e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 ||||| |||||||| | ||||||||||| || || ||||| || ||||| || |||||| Sbjct 2810900 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 2810841 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAT 47944 |||| || || |||||||| || ||||| ||||| |||| || || || Sbjct 2810840 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATTCTCTGCTTTGTATAT 2810791 >seq1225 Length=250662 Score = 102 bits (112), Expect = 1e-16 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||| ||||| || | ||||| || ||||| || ||||||||||| || || | ||| Sbjct 25370 TGAAACTCTCCTGAGAGGACTCTGCGTGTGTAGATGTTACTGGTATAGGGCTCGATGGAT 25429 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGG 77230 ||||| || ||||| || ||||||||||||||||||||||| || Sbjct 25430 TCATTATTGCCCAAGATCTGAGCAGTAGAAGCAGTTGGCATGGG 25473 Score = 93.3 bits (102), Expect = 6e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| |||||||| |||||||| ||||||||| || | || || || || || || | Sbjct 23050 TCCACCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTGGGTTCTGCGATGTGGATGT 23109 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 | | ||||| || |||||||||||||| ||||| || || ||||| || | || || | Sbjct 23110 TGAGAGACTGGCTCTGATCGATGAAAGCGCCTCTGTCTGCTGCCATCTTGAGGATAGTTT 23169 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 | || | || ||||| | || || | | ||| || | ||||| |||| Sbjct 23170 TCTGGGAGATCTCCCACACTGTCTTATAGAGTTGCTTCAAGTCATCAGGAA 23220 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || ||||| || || || || || || || || || ||||| ||||||| || |||||| Sbjct 33672 GTGCCTGCGTTGAACAAGGTGGGGGAGGCGTGGGTGAACCACCTTTCAGACAGAAGATTG 33731 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || |||||||| || | || ||||| || || || || |||| ||| | ||||||| Sbjct 33732 TAAGTTTCAATTGCAGCATCGATGTCATTTTTGTGGATCCCCACCGATACCCTCATCAAC 33791 Query 78519 ATATGCTGAGG 78529 |||||||| || Sbjct 33792 ATATGCTGTGG 33802 >seq645 Length=3212271 Score = 89.7 bits (98), Expect = 7e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||||| | ||| || || || || || || ||||| || || | || || Sbjct 2912553 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 2912612 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||||||||| || || || || || |||||||| |||||||| || || ||||| || Sbjct 2912613 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGC 2912671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694486874924640