Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Urile_20pelagicus_20[genbank_20GCA_5F002173435.1_202017-06-06] 20,951 sequences; 1,210,663,266 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq164 149 9e-31 seq638 118 2e-21 >seq164 Length=2216224 Score = 149 bits (164), Expect = 9e-31 Identities = 178/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 || |||| ||| || |||||||| ||||| ||| ||| || ||||| || |||||||| Sbjct 1432593 ATTAGTCTAGTAGTTTGGAACAGCTGCTCATCATCCCACTCCGGATGCTCCTGTTTCAGG 1432652 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | || || |||| |||||||||||| ||||| || || || |||||||| | || || Sbjct 1432653 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTAGCATACATCATCAAGCCTGGG 1432712 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 || | ||||| |||| || ||||||| | ||| || ||| || | | ||||| Sbjct 1432713 ACTAAACCAAACACCTCCTGCCCGACAGAAAACTGCAAGTGTTCAGGTATGTGAGGAGGG 1432772 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | |||| ||| || || | || ||||||||||| || ||||||||| Sbjct 1432773 TAGATCATCTCTGCCTGAGTGTCCTTTACTGTTGGTGGATACATTTCTCCATCAATCATC 1432832 Query 9484 TG 9485 || Sbjct 1432833 TG 1432834 Score = 132 bits (146), Expect = 7e-26 Identities = 170/233 (73%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || ||||| | ||| ||||||||||| || ||||||||| | ||||||||||| | || Sbjct 1430616 AAGCCCACTTTTCCACCGAAGGTGCTAGGTTTCCAGTACTCAGGGGAGCAGATAGCATTT 1430675 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 |||| || ||||| || ||||| || || || | ||| | || | ||||| |||||| Sbjct 1430676 CCCATCAGTCCTTTTAGAGAGAATGGTGCTCCAATCTCCACCATTGTTTCACCAAAGATG 1430735 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542 || || || |||| ||| || | | || | ||||||||||| ||| || | ||| Sbjct 1430736 GCACCTGGCCGTGGCTGTTCTACGAGAAGGCCTGGGTACAGCTCCATAGCATCAATGTCC 1430795 Query 8543 CCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT-TTTATTAA 8594 || ||||| | ||||| || || || || ||||||||||| ||||||| Sbjct 1430796 CCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGTAATTATTAA 1430848 >seq638 Length=2525568 Score = 118 bits (130), Expect = 2e-21 Identities = 180/254 (71%), Gaps = 2/254 (1%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || || | |||||| |||| |||||||| || ||||| || ||||| ||||| Sbjct 1901449 TCACCAATGAGGATGAGACGAGCCGTCTGGAAGAGCTGCTCATCGCTCCAGGTGGGATGC 1901390 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || ||||||| | || || || | |||||| || | ||||||| ||||||||||| Sbjct 1901389 TCCCGTTTCAGTATGTCACAGACGCGGTTGTGCTCACGCAGCCAGAGCGTGGCGTACATA 1901330 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 |||||| || | ||| ||||| |||| || || | ||||| || | || | ||| Sbjct 1901329 CAGAGCCCCGGCAGCAGCCCAAACACCTCCTGCCCCATCGCCAGCTGCTTCTTCTTGGGG 1901270 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGA-CGTCTTTGACCGAGGGGGGATACATTTC 9470 || | || || |||| |||||| | ||||| | || |||| | |||||| |||| || Sbjct 1901269 ACGGCAGGCGGGTAGACCATGTGGA-CTGGAGCATCAGTGACTGTGGGGGGGTACACCTC 1901211 Query 9471 ACCGTCAATCATCT 9484 || || | || || Sbjct 1901210 TCCATCCACCACCT 1901197 Score = 105 bits (116), Expect = 1e-17 Identities = 130/178 (73%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 8373 CTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGC 8432 |||| ||||| || ||||| ||||||||| | |||||||||||| ||| | | || | Sbjct 1903960 CTCCACCGAATGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCAAGAAGCC 1903901 Query 8433 CTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGAC 8492 | || ||||| |||||||| || | ||| | ||||| || || || || | |||||| Sbjct 1903900 CCTTCAGGGAAAACGGAGCTCCGATCTCCACCATGCTTTCTCCAAAAATACCATTGGGAT 1903841 Query 8493 GGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAG 8550 |||| ||||| | || || || || | ||||| ||| |||| |||||| || || Sbjct 1903840 GGGGTTTTTCAAGCAGCAAGCCCACATAGAACTCCAGAGCATCGATGTCTCCATACAG 1903783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716689058927040