Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq29 145 9e-30 seq517 107 2e-18 >seq29 Length=7510081 Score = 145 bits (160), Expect = 9e-30 Identities = 176/238 (74%), Gaps = 4/238 (2%) Strand=Plus/Plus Query 83119 GGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCA 83178 |||| ||||||| | | | | ||||||||||||||||||||| | ||| |||||||| Sbjct 4231299 GGGCATGCCGTCGGGGCGAATGAGGAACTTCTCGAAGTTCCAGGCGATGTCATTGCGGCA 4231358 Query 83179 CACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGG 83238 ||| || |||||| ||| ||| |||| | ||| |||| ||||||| || Sbjct 4231359 CACCGGGGACCAGATGATGTACTGCGGGTTGGTCATCAGCGACGAGGGGTCGTCGTGCGG 4231418 Query 83239 CGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGC--CCTTGCACCGTTGACC 83296 ||||| |||||| ||||||| ||| || || || || |||| | |||| || Sbjct 4231419 GAAGGGCAGCGCCTCTTTCAGGAAGGTGAACAGAGGGTGCGCGTCCTTCC--CGTTCACG 4231476 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCT 83354 |||||||||||||| | ||| || || |||| ||||||||| |||||||| ||||||| Sbjct 4231477 TCGCACTTCTCGAACATCATGAAATTGGGCTTGAAGCCGTTGCCAGGACGAACGTGCT 4231534 >seq517 Length=146695 Score = 107 bits (118), Expect = 2e-18 Identities = 123/163 (75%), Gaps = 3/163 (2%) Strand=Plus/Minus Query 83388 TTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTA 83447 || |||||| || ||||||||||| ||||| || ||||| ||||||| ||| | || Sbjct 59349 TTACCTGGTATCCAAACTGGTTACAGGGGAAGCCCAGCACGACCAGCCGCCGGGGG--TA 59292 Query 83448 GGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACG 83507 | | | || |||| ||| | ||| ||||| ||||| |||||| | |||||||| || | Sbjct 59291 GCGGGCT-TGGAGCTGGTTGAGCTGGGTGTAATCCCGCACCGTGGTGCCTCAGAGCGAAG 59233 Query 83508 CTACGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAA 83550 | ||||||||||| || | || |||||||| || | ||| || Sbjct 59232 CCACGTTCTCGATCAGGACCACGCGGCCCCGGAAAATGCCAAA 59190 Score = 96.9 bits (106), Expect = 4e-15 Identities = 207/301 (69%), Gaps = 10/301 (3%) Strand=Plus/Minus Query 83065 CTCGATGTCGGGCTCCAC--GGCCAGGGTCTGGCAG-CGGTGGCTGTACCTGCGCACGGG 83121 || |||||||||||||| || | | | |||| ||| ||||||| | || | || Sbjct 59750 CTGGATGTCGGGCTCCAGTTGGGCCGTG---GGCATACGGGGGCTGTAGCGCCGGAACGG 59694 Query 83122 CGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACAC 83181 || |||| ||||||| ||||||||| || ||||||| | ||| |||| ||| Sbjct 59693 TTCCCCCTCAGGCCCCACCAGGAACTTCTCAAAATTCCAGGAGATATCGGAGCGGTGCAC 59634 Query 83182 TGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATG-TCGTCGCTAGGCG 83240 || |||| | | | |||| ||| || || ||| || | |||||| || | Sbjct 59633 GGGGCTCCAGACGACAAAGCGGGGCTCGGCCATCAG-GTGTGCAGGCTCGTCGACCGGTG 59575 Query 83241 CCGGCAGG-GCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCG 83299 | |||||| | || | ||| ||||||| | ||||| | | ||||| |||| | Sbjct 59574 CGGGCAGGTGAGCCTTG-AGGTAGGCGAACACGGGATGGGTGTCTCTCCCGTTCACCTGG 59516 Query 83300 CACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGG 83359 ||||||| ||| || | ||||| |||||||||||| ||| || || |||||||||||| Sbjct 59515 CACTTCTGGAACAGGGTGAAGTTGGGCTCGAAGCCGCCCCCCGGCCGCACGTGCTTCAGG 59456 Query 83360 G 83360 | Sbjct 59455 G 59455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608751003260720