Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq129 149 6e-31 seq47 134 1e-26 seq567 84.2 2e-11 seq1 84.2 2e-11 >seq129 Length=2407505 Score = 149 bits (164), Expect = 6e-31 Identities = 172/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744 |||||||||| || ||||| || || || || ||||| ||||||||| | || ||||| Sbjct 239507 GAAAAATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGC 239566 Query 40745 CCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 ||| |||| | | ||| |||||| || || | ||||| |||||||| ||| | | Sbjct 239567 CCAGTGACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAG 239626 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 ||||||| | || |||| ||| || || ||||| || || | || ||||| |||| Sbjct 239627 ACCAGCAGAGGCTGATCTTCGCAGGGAAGCAGCTCGAAGATGGCCGTACCCTGTCTGACT 239686 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||| | || |||||||| ||| ||||| || | || || Sbjct 239687 ACAACATCCAGAAGGAATCTACCCTGCATCTCGTGCTGCGCCTGCGCGGTGG 239738 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| | || ||||| ||| Sbjct 239968 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAAGTCGAGCCCAGT 240027 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| |||||| || || | ||||| || |||||||| | |||||| Sbjct 240028 GACACTATTGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCAG 240087 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| |||||||| || | || |||||| ||||||||| Sbjct 240088 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTCTCTGACTACAAC 240147 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| | || ||||| || || ||||| || |||| || Sbjct 240148 ATCCAGAAGGAGTCAACTCTGCACCTTGTCCTGCGCCTGCGGGGTGG 240194 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| | || ||||| ||| Sbjct 239740 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAAGTCGAGCCCAGT 239799 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||| | || || | ||||| || |||||||| | ||||| Sbjct 239800 GACACCATTGAGAACG-TCAAAGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCA 239858 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| ||| || || ||||| || || | || ||||| |||||||| Sbjct 239859 GCAGAGGCTGATCTTCGCAGGGAAGCAGCTCGAGGATGGCCGTACCCTGTCTGACTACAA 239918 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||| || | || |||||||| ||| ||||| | ||||| ||| Sbjct 239919 CATCCAGAAAGAATCTACCCTGCATCTCGTGCTGCGCCTCAGGGGTGGC 239967 >seq47 Length=4964275 Score = 134 bits (148), Expect = 1e-26 Identities = 98/114 (86%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||||||| |||||||||||||||||||| || |||||||| || |||| ||| Sbjct 876947 GAGCCGCTGCTGCGGGAGAACCCCCGCCGGTTCGTCATCTTCCCCATCCAGTACCACGAC 876888 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 || |||| |||||||| ||||||||||| || |||||||| | ||||||||| Sbjct 876887 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGTG 876834 >seq567 Length=73590 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || |||||| | |||||||| || || |||| |||||| || |||||||| || | ||| Sbjct 72586 GGGATCCCCCCCGACCAGCAGCGGCTGATCTTCGCGGGGAAGCAGCTGGAGGATGGCCGC 72645 Query 40852 ACCCTCAACGACTACAACATCCAGAA 40877 |||||| ||||||||||||||||| Sbjct 72646 ACCCTCGCAGACTACAACATCCAGAA 72671 >seq1 Length=45240865 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| ||||| || || || || ||| ||||||||||||| || || || ||||||| Sbjct 22187501 TGGTTGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTT 22187560 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| | ||||| ||||| || |||||||| ||| || || || ||| | Sbjct 22187561 GGCTGAAGAAGAGGGGCCTGATGCCTGGATTGACTTTCTCCAATGAACTTATTAGCAGAG 22187620 Query 117162 ACGAGG 117167 | |||| Sbjct 22187621 ATGAGG 22187626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515180442635680