Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq129 107 2e-18 seq42 82.4 7e-11 >seq129 Length=2407505 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 ||||| ||||| || |||||||| || || || || |||||||||||| || || Sbjct 239936 GTAGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCCTCGAGCTGCTTCCCT 239877 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| || | |||||| || ||||| ||||| |||||||| || || ||| Sbjct 239876 GCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCTTTG 239817 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | |||||| || |||||| || | ||| | || ||||| ||||| || Sbjct 239816 ACGTTCTCAATGGTGTCACTGGGCTCGACTTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 239757 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 239756 TTGACGAAGATCTGCAT 239740 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 ||||| || || || |||||||| || || || || ||| |||||||| || || Sbjct 239708 GTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCGAGCTGCTTCCCT 239649 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| || | |||||| || || || |||||||||||||| || || || Sbjct 239648 GCGAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 239589 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||| | |||||| || ||||||||| | ||| | || ||||| ||||| || Sbjct 239588 ACATTTTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 239529 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 239528 TTGACGAAGATCTGCAT 239512 >seq42 Length=5965230 Score = 82.4 bits (90), Expect = 7e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 118549 CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGA 118608 |||| ||||||||||| ||| || ||||| |||||| ||||| || |||||| ||| Sbjct 1880501 CTTTCTGAATGTTGTAGTCGGACAGTGTGCGTCCATCCTCCAGCTGCTTCCCAGCGAAGA 1880442 Query 118609 TGAGACGCTGCTGATCGGGAGGTATGCC 118636 | || ||||||||||| ||||| ||||| Sbjct 1880441 TCAGCCGCTGCTGATCCGGAGGGATGCC 1880414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433798580980456