Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq99 370 7e-98 seq113 105 5e-18 >seq99 Length=3178465 Score = 370 bits (410), Expect = 7e-98 Identities = 751/1108 (68%), Gaps = 14/1108 (1%) Strand=Plus/Plus Query 107522 CATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGA 107581 ||||||||| || ||| || || ||||||||| || | |||| | || Sbjct 229731 CATCAACTGCTCGGGGGTCGTCCGCGGGGACCAGACGGCCATCCGGGAGGCGCAGCTCAG 229790 Query 107582 CAACCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAAC 107641 ||||||||||||| ||| | || | | | || | | | ||||| ||||| | Sbjct 229791 CAACCTGGAAGTGGCGAACAGAAGGGCTTCACCGACGCCCGGCGAGTACCTGAACATTGC 229850 Query 107642 CAGAGACTGT-GAGCGCTTCAAGG---CCCAAAGGAAGTTCATACAGTTCCCACTGAGTA 107697 || ||||| |||| |||||||| ||| || | ||| ||||||| || || Sbjct 229851 GAGGGACTGCAGAGC-CTTCAAGGAGACCC---GGCGCTACATCGAGTTCCCGCTCAGCC 229906 Query 107698 AAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACT 107757 | || ||| || |||||||| |||||||| ||| | |||| | || || || | | Sbjct 229907 AGGAGGAGGAGGAGTTCCCCATCGCCTACTCCATGATCATCCACCACAAAATCGACATGT 229966 Query 107758 TTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATG 107817 |||| ||||| ||||| |||| || ||||| |||||| | ||||| ||||| || || Sbjct 229967 TTGAGCGGCTCCTGCGGTCCGTCTACGCCCCCCAGAACGTTTACTGCGTCCATGTAGACA 230026 Query 107818 TGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATG 107877 || ||||| | | ||| | ||||| || | ||||||| | ||||||||||||||| Sbjct 230027 GCAAATCCCCGGCCGCCTTCCAGGAGGCCGTGAGGGCCATTGCTGCCTGCTTCCCCAATG 230086 Query 107878 TCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTG 107937 ||||| ||||||| ||| ||||| ||||||||||||||| | ||||| || | Sbjct 230087 TCTTCGTGGCCAGCCGCCTGGAAAGCGTGGTCTATGCCTCCTGGTCCCGGGTGCAGGCCG 230146 Query 107938 ACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATA 107997 |||| ||||| ||| | ||| | || |||||| | ||||||||| ||| | | || | Sbjct 230147 ACCTCAACTGCATGCAGGACCTCCTGCAGAGCCCTGTGCCATGGCGCTACCTCATCAACA 230206 Query 107998 CATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGT 108057 | ||||| || ||||||||||| |||||||| |||||||| |||| ||| || || || Sbjct 230207 CCTGCGGCACCGACTTCCCCATCAAGACCAACGCCGAGATAGTCCGGGCGCTGCAGCTGC 230266 Query 108058 TGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGA 108117 || |||| | ||| |||||||| ||| || || | |||| || | |||||| Sbjct 230267 TGCAGGGCCACAACGCCATGGAGTCCGAGAGGCCCTCGGCCGCCAAGAAGCAGCGCTGGG 230326 Query 108118 AATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCC 108177 | || | | | |||||| || || | | | || | ||| ||| || || | Sbjct 230327 AGTATCACCACGAGGTGGGGGAGACCATCTCTCGCACTTCCCAGAAGAAACTGCCCCCAC 230386 Query 108178 CTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCC 108237 | | | | ||||||||||| || | ||||| | | | | || | ||| || | Sbjct 230387 CCCACAGCTACCCCATGTTCACGGGCAGCGCCTACACCGCCGTCACACGGGACTTCGTGC 230446 Query 108238 AACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATA 108297 | |||| || ||||| | | | || | | || ||| | | |||| ||| | Sbjct 230447 GGTACATCTTCGAGAACCCCACCGCACGAAAGTTCCTCGAGTGGTCCGAGGACAGCTACA 230506 Query 108298 GCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGG--CTCTGT 108355 |||| ||||| ||| | ||||||||||| | || ||| | |||| || | || Sbjct 230507 GCCCTGACGAGCACGTGTGGGCCACCCTGAACCGCATGCCGGGCGTGCCGGGGAGTATGC 230566 Query 108356 TCCT-AGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGT 108414 ||| ||| | |||| || |||| ||||||| ||| | || | || ||||||| Sbjct 230567 CCCTCAGCGA---TAAGTTCCAGCTCTCGGACATGAACGCCCTTCCCCGCCTGGTCAAGT 230623 Query 108415 GGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCC 108474 || |||||| ||||| || | |||| ||| ||||| || | |||||| | || || Sbjct 230624 GGGAGTACCTGGAGGGGGACATGAGCAAGGGCGCGCCCTACCCTCCCTGCACCGGCCGCC 230683 Query 108475 ATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATC 108534 | | | | |||||||||| ||||||| || ||| || |||||| || ||| | || | Sbjct 230684 ACCAGCGCTCCATCTGCATCTACGGGGTGGGCGACGTGCCCTGGATGCTGCAGCAACACC 230743 Query 108535 ACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAG 108594 | ||| |||| |||||||| ||||| |||||| ||| | | | ||||| | || | Sbjct 230744 ATCTCCTGGCCAACAAGTTCGACCCCGAGGTGGACGATGCGGCCATCCAGTGTCTCGAGG 230803 Query 108595 AGTACCTACGTCATAAGGCCATCTATGG 108622 ||||||| || || |||||| | || || Sbjct 230804 AGTACCTGCGCCACAAGGCCCTGTACGG 230831 >seq113 Length=2083070 Score = 105 bits (116), Expect = 5e-18 Identities = 560/880 (64%), Gaps = 17/880 (2%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || ||||| ||||| ||| || || ||||| ||||| || ||||| || | || Sbjct 2058482 CCTCTCAGTAACGAAGAAGCAGAATTTCCAATTGCTTACTCAATAGTGGTTTATCACAAA 2058541 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||| | |||| | || || || | | ||||| || ||||| | ||||| | Sbjct 2058542 ATTGAGATGCTTGATAGACTTCTAAGATCAATCTATGCTCCACAGAATTTTTACTGCATT 2058601 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || || || ||||| ||||| | || | || || |||| || | || || Sbjct 2058602 CATGTAGACAAAAAGTCTCCAGAATCCTTTTTTGCTGCTGTGAAGGGAATAGTCTCATGT 2058661 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 || |||||||| || |||| |||| | ||||| ||||| || ||| |||| Sbjct 2058662 TTTGATAATGTCTTTATTTCCAGCCAGTTAGAGAGTGTGGTATATGCTTCGTGGAGCAGA 2058721 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCA-GTGCCA--TGGAAG 107984 ||||| || ||| | ||||| ||| |||| ||||| || | || | | ||||| Sbjct 2058722 GTGCAGGCAGACATTAACTGCATGAAAGAT---CTCCATAGAAGAAGTTCAAACTGGAAA 2058778 Query 107985 TACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTG 108044 ||| || | || ||| || | ||||| || ||||||||||| || || || | Sbjct 2058779 TACCTAATAAACCTATGTGGTATGGACTTTCCTATAAAGACCAACAAGGAAATAGTAGAG 2058838 Query 108045 GCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaa 108104 | || | |||||| | ||||| |||| | || | ||| | |||| Sbjct 2058839 AAATTAAAAGCCCTTAAGGGTGAAAACAGCTTGGAAACAGAAAAAATGCCTGTTTACAAA 2058898 Query 108105 aaaaaTCGCTGGAAATACCGCTATGAGGTGACAGAC---ACACTGTACCCTACCAGCA-A 108160 || | ||||| | | | ||||| | | || | | | | || ||| | Sbjct 2058899 GAAGTAAGGTGGAAGAAACACCATGAGATTATTGATGGTAAAATAAAGAACACAGGCATA 2058958 Query 108161 GATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGC 108220 || || || || ||| | | || | || | || | |||||||||||| | Sbjct 2058959 GACAAACAACTA-CCACCTCTCAGTACTCCAGTTTTTTCTGGCAGTGCCTATTTTGTAGT 2059017 Query 108221 CT-CTCGAGCCTTTGTCCAACATGTCTTAGACAACC-CTAAATCCCAAAGACTGGTTGAA 108278 | |||| ||||| || |||| |||| ||| | |||| | ||| | |||| Sbjct 2059018 TAGCAGGAGC-TTTGTAGAATATGTACTAGAAAACAGCAAAATACTGAAGT-TCATTGAG 2059075 Query 108279 TGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCG 108338 |||| ||||| || || ||||| || || |||| ||||| || ||||| | ||| Sbjct 2059076 TGGGCGAAAGATACTTACAGCCCAGATGAGTACCTGTGGGCAACAATTCAGAGAA-TCCC 2059134 Query 108339 TGGA-TGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCAT 108397 || | | || ||| | || || | | |||||| || | || ||||||| |||| | Sbjct 2059135 TGAAGTCCCAGGCGCGTTTTCTTCCAGCGACAAGTACGACGTTTCTGACATGAATGCCCT 2059194 Query 108398 CGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGC 108457 |||||| | ||||||||||||||| || || ||||| || || ||||| || | Sbjct 2059195 GGCCAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGATGTGTCCAAAGGTGCGCCCTACCC 2059254 Query 108458 ACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTG 108517 ||| ||| |||| | || | | | || ||| || | |||||| || |||| Sbjct 2059255 ACCGTGCAGTGGAGTTCACATCCGCTCTGTGTGTGTTTTTGGAGTAGGGGACTTGAACTG 2059314 Query 108518 GATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 ||| || | |||||| ||| | || || || ||||||||| Sbjct 2059315 GATGCTACGGAACCACCACTTGTTTGCTAATAAGTTTGAC 2059354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348243256442532