Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq108 116 3e-21 >seq108 Length=2131741 Score = 116 bits (128), Expect = 3e-21 Identities = 120/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 20401 ATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTGTCG 20460 ||||||||||||||||| ||| || ||||| || || ||| ||| ||||||||| Sbjct 1514152 ATGGCTTTGCCTCCATGCCATGCCCTTTGCCAGTTCTATGTTCTAAATGGTGAATTGTCT 1514211 Query 20461 TGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAGT 20520 || || | ||||| | || | || |||||||| || || ||||| |||||||| || Sbjct 1514212 TGCCAGCTCTATCAGAGGTCTGGAGACATGGGACTAGGAGTGCCTTTTAATATTGCCAGC 1514271 Query 20521 TATGCGCTGCTTACGTATATGATTGCACATGTTACAG 20557 ||| | ||||| ||||| |||||||| ||||| |||| Sbjct 1514272 TATTCACTGCTCACGTACATGATTGCCCATGTCACAG 1514308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399154722099010