Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30]
6,018 sequences; 1,052,600,561 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq129 109 4e-19
>seq129
Length=2407505
Score = 109 bits (120), Expect = 4e-19
Identities = 164/232 (71%), Gaps = 1/232 (0%)
Strand=Plus/Minus
Query 18094 GTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGT 18153
|||| || ||||| || | || || | ||| || ||||| || || || ||||||||||
Sbjct 240198 GTTA-CCACCCCGCAGGCGCAGGACAAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGT 240140
Query 18154 CGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCA 18213
| | | || | |||||||| || ||||| ||| |||| || || || || ||
Sbjct 240139 CAGAGAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAG 240080
Query 18214 CGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCT 18273
|| | ||||||||| || || | |||||| | | ||| |||||||| |||||
Sbjct 240079 GAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCAATAGTGTCACTGGGCT 240020
Query 18274 CGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAt 18325
|| ||||| ||||||| | ||||| |||| || || ||||| || |||||
Sbjct 240019 CGACTTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 239968
Score = 86.0 bits (94), Expect = 5e-12
Identities = 143/207 (69%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182
|| || || ||||| || || ||||||||||| | || || | |||||| | ||
Sbjct 239714 TGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCGAGCTGC 239655
Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242
|| || || |||| || || || || || ||| | ||| ||||| || || |
Sbjct 239654 TTCCCTGCGAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTG 239595
Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302
|||||| | | ||| ||||||| ||||||| |||| ||||||| | ||||| |||
Sbjct 239594 GCCTTGACATTTTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTC 239535
Query 18303 AATGTTTTTACAAAAATTTGCAttttt 18329
| || || || || || |||||||||
Sbjct 239534 AGGGTCTTGACGAAGATCTGCATTTTT 239508
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379316177251410
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |