Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1 129 8e-25 seq47 114 2e-20 seq586 96.9 5e-15 >seq1 Length=45240865 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| ||||| ||||| ||||| || || | ||| ||||| ||||| | ||| | Sbjct 22187626 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 22187567 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||||||||| | ||||| || || ||||||||||| ||||| ||||| ||||||| Sbjct 22187566 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 22187507 Query 50102 CAACAAGTCTCTCTCC 50117 |||| | |||||| || Sbjct 22187506 CAACCACTCTCTCACC 22187491 >seq47 Length=4964275 Score = 114 bits (126), Expect = 2e-20 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| |||||||| || || || || ||||| |||||||| ||||||| || | || | Sbjct 874360 CCTCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 874419 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | |||||||| || || ||||| || |||||||||||||||||||| || || ||||| | Sbjct 874420 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAAG 874479 Query 50102 CAACAA 50107 | |||| Sbjct 874480 CCACAA 874485 >seq586 Length=108663 Score = 96.9 bits (106), Expect = 5e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||| ||||| ||||||||||| ||||| ||||| | || || || |||| || ||| Sbjct 77807 ACTCGCTTCATGAAGAGATCAGGGATCCAGAGAGCAAAGAACAGGTCCCTGGCTCGCTGC 77748 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || || ||||| ||||| || | || |||||| | | || || | |||||||| Sbjct 77747 TCTTCTTTCCCTGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCCACGGC 77688 Query 80059 TCCAAGTATATGGCCATAACTCCCGGTC 80086 |||| ||| ||||| | | | || |||| Sbjct 77687 TCCAGGTAGATGGCAAAAGCCCCAGGTC 77660 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 |||| || | ||| || || |||||||| || || || ||||| || | |||||| | | Sbjct 67678 CACTGAAGACTTTCTTGGTCTCCTTGTGCAGGTTGGAGACGGCGATGCGGGCGGCCAGGA 67619 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 |||| || || || || | || || ||||| || | || || ||||||||||||| Sbjct 67618 TGGCGTAGTCGGGGTGCTTGGTGGTCAGCGTGGCCGCGGTCTCTGCGGCCAGAGTGTCCA 67559 Query 80798 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 80843 || ||||| || || || | || | || ||||| |||||||| Sbjct 67558 GCTCCACCGTGGTGACCCCGCTGTAGAGCCCCTGGATCACCTTCAT 67513 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| || ||||| ||||| || || || || || | || || || || ||||| | Sbjct 100033 TCCAGCCATAGAAGTGCATGCTGGTGAGCTTCCCGTAGTTGGGCTCAGCAATGTGGATGT 99974 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 ||| || || || || ||||||||||| || |||||||||||||| || | ||| || | Sbjct 99973 TCAGGGACTGGCTCTGGTCGATGAAGGCCCCTCTGTCTGCAGCCATCTTCAGGATGGTTT 99914 Query 78905 TTTGTGGAATTTCCCA 78920 |||| | || ||||| Sbjct 99913 TTTGGGAGATCTCCCA 99898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718214768229520