Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 9e-16 seq47 93.3 4e-14 >seq1 Length=45240865 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 |||||||| || || || || || || || || | || ||||| || || | || || Sbjct 22187624 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCTTC 22187565 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | |||||||||||||||||| ||||||||||| || || ||||| ||||| ||||| || Sbjct 22187564 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCA 22187505 Query 13295 ATCAACCTTTCACC 13308 | || || ||||| Sbjct 22187504 ACCACTCTCTCACC 22187491 Score = 86.0 bits (94), Expect = 5e-12 Identities = 104/140 (74%), Gaps = 4/140 (3%) Strand=Plus/Minus Query 12804 AAAAATCAATATCTAGAGAAAATACATCATCGTCCTTATTT--GACATAACAGACATTTT 12861 ||||||| ||| |||| ||| |||| || | || ||| | |||||||| | Sbjct 22195484 AAAAATCTGCATCCAGAGTAAAGACATTGTC--CATTGTTTCTGCCATAACAGCAAAACG 22195427 Query 12862 TTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTC 12921 ||||||||| ||| | || ||||| || |||||||||||||| | |||||||| || Sbjct 22195426 TTGATATTCCGAAACCCGCTTCTCAAAGAAATTTGTTTTTCCTTCCAGAGAAATATTCTC 22195367 Query 12922 CATAAAATCGAAAGGATTTT 12941 ||| ||||| |||||||||| Sbjct 22195366 CATGAAATCAAAAGGATTTT 22195347 >seq47 Length=4964275 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 ||||||||||| || ||||| || ||||| || || || ||||| | |||| ||| || Sbjct 874362 TCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 874421 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGC 13293 | |||||| || | ||||| || || ||||| || |||||||| || |||||||| || Sbjct 874422 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAAGC 874480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430950789865236