Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq34 161 2e-34 seq129 145 2e-29 seq1 116 9e-21 seq47 102 2e-16 >seq34 Length=6428186 Score = 161 bits (178), Expect = 2e-34 Identities = 131/159 (82%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 78492 TATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTAC 78551 |||||||||||||| ||||||||||||| || || | ||||| | ||||||||||| Sbjct 1199978 TATGGTGGTATTATGTCTCTAAAGGAATTGAGTATTTGGATACAGTATTCTTCATCCTGA 1199919 Query 78552 GAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTACTT 78611 | ||||||||||| ||||||||||| || ||||| ||||| ||||| || ||||| || | Sbjct 1199918 GGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTCACCT 1199859 Query 78612 TGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 || | ||||| |||||||| ||| | ||||| ||||||| Sbjct 1199858 TGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 1199820 >seq129 Length=2407505 Score = 145 bits (160), Expect = 2e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | |||||||| ||||| || || |||||||| || || | || ||| Sbjct 239723 AGCACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCT 239664 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || || || || || |||||||| || || || || || || || || ||| Sbjct 239663 TCGAGCTGCTTCCCTGCGAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCC 239604 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| || || |||||||| | ||| || || || || ||||| || || || ||| Sbjct 239603 TGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTC 239544 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || ||||| || || || || || ||||||||||| Sbjct 239543 TTGCCAGTCAGGGTCTTGACGAAGATCTGCATTTT 239509 Score = 145 bits (160), Expect = 2e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || ||||| | |||||||||||||| || || |||||| Sbjct 239969 ATGCCACCCCTGAGGCGCAGCACGAGATGCAGGGTAGATTCTTTCTGGATGTTGTAGTCA 239910 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || || || || || || || || || || |||||||| || |||||| Sbjct 239909 GACAGGGTACGGCCATCCTCGAGCTGCTTCCCTGCGAAGATCAGCCTCTGCTGGTCAGGA 239850 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||| ||||| || || || | ||| || || || || Sbjct 239849 GGGATGCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCG 239790 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || ||||| ||||| || || || || || |||||||| Sbjct 239789 ACTTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 239740 >seq1 Length=45240865 Score = 116 bits (128), Expect = 9e-21 Identities = 99/122 (81%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 ||||| ||||| || || ||||| || ||||||||||| || ||||| ||||| |||||| Sbjct 22187503 GTTGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGG 22187562 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||| || ||||| ||||| ||||| |||||||| || ||| | || ||||| || Sbjct 22187563 CTGAAGAAGAGGGGCCTGATGCCTGGATTGACTTTCTCCAATGAACTTATTAGCAGAGAT 22187622 Query 269258 GA 269259 || Sbjct 22187623 GA 22187624 >seq47 Length=4964275 Score = 102 bits (112), Expect = 2e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 |||||| | | || |||||||| ||||| ||||| || |||||||| || |||||||| Sbjct 874495 GGAGAACGTGTTGTGGCTTTTGCAGCTGTGGAAGGAATCTTCTTTTCTGGCTCTTTTGCA 874436 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 | || |||||| ||||||||||||| | ||||| ||| | ||||| ||||| || | Sbjct 874435 TCAATTTTTTGGCTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCTAATGAGCTC 874376 Query 269246 ATAAGCAGGGACGA 269259 || || || || || Sbjct 874375 ATCAGTAGAGATGA 874362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151309620706744