Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30]
6,018 sequences; 1,052,600,561 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq45 179 5e-40
seq138 125 1e-23
>seq45
Length=5063729
Score = 179 bits (198), Expect = 5e-40
Identities = 218/297 (73%), Gaps = 0/297 (0%)
Strand=Plus/Minus
Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738
|||| |||| || ||||| || || |||||| | |||| || ||| | | |||
Sbjct 163556 GGAAGGCGGTGAAGGGACAGCCCTTCACGTTGTTGCAGATGAGCTTCTGCAGGGAGGCAG 163497
Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798
| |||||||| | || ||||| | || |||||||||||||| |||||||| | ||||
Sbjct 163496 TGTTGACGATGTCGAAGCCCACCTTGCCCCCGAAGGTGCTGGGCTTCCAGTACTCGGGGG 163437
Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858
|||||||| |||| |||| || || || ||||| || || ||||||| ||| | |||
Sbjct 163436 AGCAGATGGCGTTGCCCATCAGCCCCTTCAGGGAGAATGGGGCCCCCATCTCCACCATGG 163377
Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918
|||| || |||||||| ||| |||||||| ||||||| | || | ||||| |||||
Sbjct 163376 TCTCGCCAAAGATGGCCCCGGGCCGGGGCTTCTCCACCAGCAGGCCTGGGTACAGCTCCA 163317
Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975
|| || ||||| ||||| || || || || || || || || ||||||||||
Sbjct 163316 TGGCATCAATGTCCCCGTACAGCTCCTCCAGCTCCGCTGCCATCTCTTTTTCTCCTG 163260
Score = 107 bits (118), Expect = 3e-18
Identities = 169/242 (70%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681
||||| || | |||||| || || || || ||| ||| || || || | | || ||
Sbjct 161621 ATGAGCCGGGCGGTCTGGAAGAGCTGCTCATCATCCCACTCGGGGTGCTGGTGCTTGAGC 161562
Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741
|| ||||| || | |||||| || | |||||||| || |||||||||||||| || |||
Sbjct 161561 ACGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGATCGTGGCGTACATCATGAGCCCCGGC 161502
Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801
|||||||| || |||| || || || | | |||| | |||||||| | ||| ||
Sbjct 161501 ACCAGGCCGAACACCTCCTGGCCCACGGAGAAGCGCAGGTGCTCGGGCACATGGGGCGGG 161442
Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861
|| | ||| | |||| || |||| || || |||||||| || || || |||
Sbjct 161441 TACAGCATCTCTGCCTGCGTGTCCCGCACCGTCGGAGGGTACATTTCTCCATCGATCATC 161382
Query 9862 TG 9863
||
Sbjct 161381 TG 161380
Score = 87.8 bits (96), Expect = 3e-12
Identities = 111/153 (73%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346
|||||||| || || | || ||||| || || | || || || || | |||| |
Sbjct 159788 TCACCTTTAACACCCATTGGTGTTGGGCAGTCAAGTCCTACTGGTGGAAGGCTTCTTGTG 159729
Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406
|| ||||| |||||||| ||||||||||| || ||| | |||||| ||||| |
Sbjct 159728 TAGTAGGAAAGATTGGAATAAGCTTCCCAGGTTTTGTAATTGTAGTCACTATTGTAAGTT 159669
Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439
|| |||||||||||||||| ||||| |||||
Sbjct 159668 GGTGGGCTGTCAATCAAATGTGATCTTGCTGAA 159636
>seq138
Length=2120562
Score = 125 bits (138), Expect = 1e-23
Identities = 149/202 (74%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798
|||| |||||| |||| || |||| || || || |||||||||||||| | ||||
Sbjct 1629722 TCTTCACGATCTCAAAGCCGGTTGCTCCACCAAATGTACTGGGTTTCCAGTACTCTGGGG 1629781
Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858
|||||||| ||| | | || || || |||||||| ||||| || | ||| | ||||
Sbjct 1629782 AGCAGATGGGGTTTCCAAAAAGCCCCTTCAGGGAAAATGGAGCTCCGATCTCCACCATGC 1629841
Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918
| || || || ||| ||||||| |||| || |||| || || || | ||| |||||||
Sbjct 1629842 TTTCCCCAAAAATGCCGTTGGGTTGGGGTTTCTCCAGCAGCAAGCCTGGGTAAAACTCCA 1629901
Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940
||| || |||||||| || ||
Sbjct 1629902 GAGCATCAATGTCTCCATACAG 1629923
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 708471501221920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |