Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq45 179 5e-40 seq138 125 1e-23 >seq45 Length=5063729 Score = 179 bits (198), Expect = 5e-40 Identities = 218/297 (73%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| |||| || ||||| || || |||||| | |||| || ||| | | ||| Sbjct 163556 GGAAGGCGGTGAAGGGACAGCCCTTCACGTTGTTGCAGATGAGCTTCTGCAGGGAGGCAG 163497 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||||||| | || ||||| | || |||||||||||||| |||||||| | |||| Sbjct 163496 TGTTGACGATGTCGAAGCCCACCTTGCCCCCGAAGGTGCTGGGCTTCCAGTACTCGGGGG 163437 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| |||| |||| || || || ||||| || || ||||||| ||| | ||| Sbjct 163436 AGCAGATGGCGTTGCCCATCAGCCCCTTCAGGGAGAATGGGGCCCCCATCTCCACCATGG 163377 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 |||| || |||||||| ||| |||||||| ||||||| | || | ||||| ||||| Sbjct 163376 TCTCGCCAAAGATGGCCCCGGGCCGGGGCTTCTCCACCAGCAGGCCTGGGTACAGCTCCA 163317 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || || ||||| ||||| || || || || || || || || |||||||||| Sbjct 163316 TGGCATCAATGTCCCCGTACAGCTCCTCCAGCTCCGCTGCCATCTCTTTTTCTCCTG 163260 Score = 107 bits (118), Expect = 3e-18 Identities = 169/242 (70%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||| || | |||||| || || || || ||| ||| || || || | | || || Sbjct 161621 ATGAGCCGGGCGGTCTGGAAGAGCTGCTCATCATCCCACTCGGGGTGCTGGTGCTTGAGC 161562 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 || ||||| || | |||||| || | |||||||| || |||||||||||||| || ||| Sbjct 161561 ACGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGATCGTGGCGTACATCATGAGCCCCGGC 161502 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||||||| || |||| || || || | | |||| | |||||||| | ||| || Sbjct 161501 ACCAGGCCGAACACCTCCTGGCCCACGGAGAAGCGCAGGTGCTCGGGCACATGGGGCGGG 161442 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 || | ||| | |||| || |||| || || |||||||| || || || ||| Sbjct 161441 TACAGCATCTCTGCCTGCGTGTCCCGCACCGTCGGAGGGTACATTTCTCCATCGATCATC 161382 Query 9862 TG 9863 || Sbjct 161381 TG 161380 Score = 87.8 bits (96), Expect = 3e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||||| || || | || ||||| || || | || || || || | |||| | Sbjct 159788 TCACCTTTAACACCCATTGGTGTTGGGCAGTCAAGTCCTACTGGTGGAAGGCTTCTTGTG 159729 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 || ||||| |||||||| ||||||||||| || ||| | |||||| ||||| | Sbjct 159728 TAGTAGGAAAGATTGGAATAAGCTTCCCAGGTTTTGTAATTGTAGTCACTATTGTAAGTT 159669 Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 || |||||||||||||||| ||||| ||||| Sbjct 159668 GGTGGGCTGTCAATCAAATGTGATCTTGCTGAA 159636 >seq138 Length=2120562 Score = 125 bits (138), Expect = 1e-23 Identities = 149/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||| |||||| |||| || |||| || || || |||||||||||||| | |||| Sbjct 1629722 TCTTCACGATCTCAAAGCCGGTTGCTCCACCAAATGTACTGGGTTTCCAGTACTCTGGGG 1629781 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| ||| | | || || || |||||||| ||||| || | ||| | |||| Sbjct 1629782 AGCAGATGGGGTTTCCAAAAAGCCCCTTCAGGGAAAATGGAGCTCCGATCTCCACCATGC 1629841 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || || || ||| ||||||| |||| || |||| || || || | ||| ||||||| Sbjct 1629842 TTTCCCCAAAAATGCCGTTGGGTTGGGGTTTCTCCAGCAGCAAGCCTGGGTAAAACTCCA 1629901 Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940 ||| || |||||||| || || Sbjct 1629902 GAGCATCAATGTCTCCATACAG 1629923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708471501221920