Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq4 127 3e-25 >seq4 Length=19526422 Score = 127 bits (140), Expect = 3e-25 Identities = 175/245 (71%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 19478190 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 19478131 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || |||||||| |||| || | |||| || |||| Sbjct 19478130 CCGCCGCCTGGCTCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 19478071 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| ||| ||| |||| || || || ||| || || Sbjct 19478070 GCGCGGCGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGCGACGCCGTCACCTACACGGA 19478011 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 19478010 GCACGCCAAGAGGAAGACGGTCACGGCCATGGACGTGGTCTACGCCCTCAAGCGCCAGGG 19477951 Query 16672 CCGTA 16676 |||| Sbjct 19477950 TCGTA 19477946 Score = 123 bits (136), Expect = 4e-24 Identities = 173/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 19442337 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 19442278 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || |||||||| |||| || | |||| || |||| Sbjct 19442277 CCGCCGCCTGGCTCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 19442218 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| ||| ||| |||| || || || ||| || || Sbjct 19442217 GCGCGGCGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGCGACGCCGTCACCTACACGGA 19442158 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 19442157 GCACGCCAAGAGGAAGACGGTCACGGCCATGGACGTGGTCTACGCCCTCAAGCGCCAGGG 19442098 Query 16672 CCG 16674 || Sbjct 19442097 TCG 19442095 Score = 123 bits (136), Expect = 4e-24 Identities = 173/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 19469711 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 19469770 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || |||||||| |||| || | |||| || |||| Sbjct 19469771 CCGCCGCCTGGCTCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 19469830 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| ||| ||| |||| || || || ||| || || Sbjct 19469831 GCGCGGCGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGCGACGCCGTCACCTACACGGA 19469890 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 19469891 GCACGCCAAGAGGAAGACGGTCACGGCCATGGACGTGGTCTACGCCCTCAAGCGCCAGGG 19469950 Query 16672 CCG 16674 || Sbjct 19469951 TCG 19469953 Score = 122 bits (134), Expect = 1e-23 Identities = 174/245 (71%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 19501618 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 19501559 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || |||||||| |||| || | |||| || |||| Sbjct 19501558 CCGCCGCCTGGCTCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 19501499 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| ||| ||| |||| || || || ||| || || Sbjct 19501498 GCGCGGCGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGCGACGCCGTCACCTACACGGA 19501439 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | || || ||||| ||||||| | ||||| || | || || || || Sbjct 19501438 GCACGCCAAGAGGAAAACGGTCACGGCCATGGACGTAGTCTACGCTCTTAAGCGCCAGGG 19501379 Query 16672 CCGTA 16676 |||| Sbjct 19501378 TCGTA 19501374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79069697700474