Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq129 109 5e-19 >seq129 Length=2407505 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | ||||| || | || ||| | ||||||||| ||| Sbjct 239740 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAAGTCGAGCCCAGT 239799 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | |||||| ||||| ||||| |||||||| ||||| || || Sbjct 239800 GACACCATTGAGAACGTCAAAGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCAG 239859 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | || || ||||| ||||| |||| | | | | | || || ||| Sbjct 239860 CAGAGGCTGATCTTCGCAGGGAAGCAGCTCGAGGATGGCCGTACCCTGTCTGACTACAAC 239919 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || || ||||||||||| | ||| | ||| Sbjct 239920 ATCCAGAAAGAATCTACCCTGCATCTCGTG 239949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429904466612790