Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1712 127 1e-24 seq1410 98.7 7e-16 seq3320 96.9 2e-15 >seq1712 Length=4852 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 47 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 106 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 107 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 141 >seq1410 Length=16747 Score = 98.7 bits (108), Expect = 7e-16 Identities = 77/92 (84%), Gaps = 5/92 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| |||||||| |||||||||||||| |||||||| ||||| || |||||| | Sbjct 7291 AAGCCTGTTCCCTTTGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCAT 7232 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGA 25988 | |||| ||||||| | ||||||||||||||| Sbjct 7231 TCATCCATTCATGCACATCACTAATTAGATGA 7200 >seq3320 Length=3091 Score = 96.9 bits (106), Expect = 2e-15 Identities = 77/93 (83%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| |||||||| |||| ||||||||| |||||||| ||| | || |||||||| Sbjct 1862 AAGCCTGTTCCCTTTGCTGAGGTTTCGCTGGATAGTAGGTAGAGACAGTGGGAATCTCGT 1803 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 | |||| ||||||| | |||||||||||||||| Sbjct 1802 TCATCCATTCATGCACATCACTAATTAGATGAC 1770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334922633506958