Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq129 107 2e-18 >seq129 Length=2407505 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||||||||| || |||||||| || || ||||| ||| || || || || || Sbjct 239936 GTAGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCCTCGAGCTGCTTCCCT 239877 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| || | ||| ||||| ||||| |||||||| ||||| ||||| ||| Sbjct 239876 GCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCTTTG 239817 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| ||||| || | ||| | || ||||| ||||| || Sbjct 239816 ACGTTCTCAATGGTGTCACTGGGCTCGACTTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 239757 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 239756 TTGACGAAGATCTGCAT 239740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420103585505016