Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq129 140 8e-28 >seq129 Length=2407505 Score = 140 bits (154), Expect = 8e-28 Identities = 171/232 (74%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| | ||| | || |||||||| | || |||||| ||||| || |||| Sbjct 239970 CATG-CCACCCCTGAGGCGCAGCACGAGATGCAGGGTAGATTCTTTCTGGATGTTGTAGT 239912 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || || || || || || | || || |||||||||||||| | ||| || | Sbjct 239911 CAGACAGGGTACGGCCATCCTCGAGCTGCTTCCCTGCGAAGATCAGCCTCTGCTGGTCAG 239852 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| ||||| || |||||||| || ||||| ||||| || || | || || | | Sbjct 239851 GAGGGATGCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCT 239792 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||||| || ||||| ||||| || ||||| ||||||||||| |||||||| Sbjct 239791 CGACTTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 239740 Score = 129 bits (142), Expect = 1e-24 Identities = 168/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | || |||||||| | || ||| || ||||| || ||||| | Sbjct 239738 CCACCGCGCAGGCGCAGCACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAC 239679 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||| | || || |||||||||||||| | ||| || |||||| Sbjct 239678 AGGGTACGGCCATCTTCGAGCTGCTTCCCTGCGAAGATCAGCCTCTGCTGG---TCTGGG 239622 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || |||||||| || || || || ||||| || | || || | || Sbjct 239621 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCG 239562 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || ||||| ||||| || ||||| ||||||||||| ||||||||| Sbjct 239561 ACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCATT 239511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179563442010204