Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq129 113 4e-20 seq586 109 5e-19 >seq129 Length=2407505 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| ||| | ||| | ||||| || || || || ||||| || | Sbjct 239738 CCACCGCGCAGGCGCAGCACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGAC 239679 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || ||||| || || ||| |||||| | |||||| || || || Sbjct 239678 AGGGTACGGCCATCTTCGAGCTGCTTCCCTGCGAAGATCAGCCTCTGCTGGTCTGGGGGA 239619 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||||| | ||| | |||||| | |||||| Sbjct 239618 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCGACC 239559 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || ||||| ||||| || || || || |||||||| Sbjct 239558 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 239512 >seq586 Length=108663 Score = 109 bits (120), Expect = 5e-19 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 146664 CTCGTCCTTGTCGCAATACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCC 146723 |||||||||| | |||| ||| ||||||| ||| |||||||||||||||||| |||| Sbjct 80851 CTCGTCCTTGCTGGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCC 80792 Query 146724 CAAAtttttttGGTTACTAAACTTGTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCC 146783 || || | ||||| || | ||||||||| |||||||||||||||||| || || Sbjct 80791 CAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCC 80732 Query 146784 GGTTTCGACATTGGTCTCGACGATG 146808 || ||| | || ||||| |||| Sbjct 80731 AGTCTCGGTCTGGGACTCGATGATG 80707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475465030452320