Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq45 181 2e-40 seq138 109 8e-19 >seq45 Length=5063729 Score = 181 bits (200), Expect = 2e-40 Identities = 220/300 (73%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| |||| || ||||| |||||||| ||| || ||||| ||| | || || | Sbjct 163556 GGAAGGCGGTGAAGGGACAGCCCTTCACGTTGTTGCAGATGAGCTTCTGCAGGGAGGCAG 163497 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || |||||||| || || || | || |||||||||||||| ||||||||| | |||| Sbjct 163496 TGTTGACGATGTCGAAGCCCACCTTGCCCCCGAAGGTGCTGGGCTTCCAGTACTCGGGGG 163437 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 |||||||| |||| |||| ||||| |||| ||| || || ||||||| ||| | ||| Sbjct 163436 AGCAGATGGCGTTGCCCATCAGCCCCTTCAGGGAGAATGGGGCCCCCATCTCCACCATGG 163377 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 |||| || |||||||| ||||| || || || || || | | ||| | ||| || || | Sbjct 163376 TCTCGCCAAAGATGGCCCCGGGCCGGGGCTTCTCCACCAGCAGGCCTGGGTACAGCTCCA 163317 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACAA 9179 || || | ||| || || || | |||| ||| || || ||||| || || ||| ||| Sbjct 163316 TGGCATCAATGTCCCCGTACAGCTCCTCCAGCTCCGCTGCCATCTCTTTTTCTCCTGCAA 163257 Score = 149 bits (164), Expect = 9e-31 Identities = 178/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 || || || | ||| || || | |||||| ||| |||| || ||||| | ||| ||||| Sbjct 161621 ATGAGCCGGGCGGTCTGGAAGAGCTGCTCATCATCCCACTCGGGGTGCTGGTGCTTGAGC 161562 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 || |||||||| | |||||| || | |||||| || |||||||||||||| | |||||| Sbjct 161561 ACGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGATCGTGGCGTACATCATGAGCCCCGGC 161502 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 || | || ||||| || | ||||| | |||||||| | |||||||| | ||||| Sbjct 161501 ACCAGGCCGAACACCTCCTGGCCCACGGAGAAGCGCAGGTGCTCGGGCACATGGGGCGGG 161442 Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACC 9966 |||||||| | |||| || || || || || || |||||||| || || || | | Sbjct 161441 TACAGCATCTCTGCCTGCGTGTCCCGCACCGTCGGAGGGTACATTTCTCCATCGATCATC 161382 Query 9967 TG 9968 || Sbjct 161381 TG 161380 Score = 105 bits (116), Expect = 1e-17 Identities = 108/139 (78%), Gaps = 4/139 (3%) Strand=Plus/Minus Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 || |||| ||| | |||||| |||| ||||| ||||||||||| || || ||||||||| Sbjct 162694 TCGGGCAGCAGCGGGTGCCAGTGGTACAGGGTGTTGAACTCGGCTGCGATGCGGTTCTGG 162635 Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 ||||| || ||| |||||| | ||| |||||||| | |||| ||||||||||| Sbjct 162634 TACTGGAACTTCTGGT--TGAACAGCAGCTCAGGGTCAAACTTCAGCTTGAAGTGGTACC 162577 Query 9671 CGCTGAGTTGCTGGACATA 9689 | || || ||||| ||||| Sbjct 162576 CACTCAGGTGCTGCACATA 162558 >seq138 Length=2120562 Score = 109 bits (120), Expect = 8e-19 Identities = 170/243 (70%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 || || |||||||| || || || | || || || || ||||||||||||||| | Sbjct 1629718 GCCGTCTTCACGATCTCAAAGCCGGTTGCTCCACCAAATGTACTGGGTTTCCAGTACTCT 1629777 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 |||||||||||| ||| | | ||||| |||| |||||| ||||| || | ||| | Sbjct 1629778 GGGGAGCAGATGGGGTTTCCAAAAAGCCCCTTCAGGGAAAATGGAGCTCCGATCTCCACC 1629837 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 ||||| || || || ||| | ||| | ||||| || | | ||||| | ||| | Sbjct 1629838 ATGCTTTCCCCAAAAATGCCGTTGGGTTGGGGTTTCTCCAGCAGCAAGCCTGGGTAAAAC 1629897 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || | ||| || | ||| ||||| || |||||| ||| || || |||| | ||| ||| Sbjct 1629898 TCCAGAGCATCAATGTCTCCATACAGCTCTTCCAGCTCTGCTGCCTTCTCTTCCTCTCCT 1629957 Query 9176 ACA 9178 || Sbjct 1629958 GCA 1629960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723673557561200