Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq586 98.7 2e-15 >seq586 Length=108663 Score = 98.7 bits (108), Expect = 2e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 203953 GTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATC 204012 |||||| || || ||||| |||||||| |||||||| ||||||||||| | | | | || Sbjct 99996 GTTGGGCTCAGCAATGTGGATGTTCAGGGACTGGCTCTGGTCGATGAAGGCCCCTCTGTC 99937 Query 204013 TGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTG 204061 ||| ||||| || | ||||| || || || ||||||||||| |||||| Sbjct 99936 TGCAGCCATCTTCAGGATGGTTTTTTGGGAGATCTCCCACACGGTCTTG 99888 Score = 86.0 bits (94), Expect = 1e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255 ||| || || || || ||||||| || ||| | | |||| ||||| | || |||| | Sbjct 97788 CTGGAACTCCCCCGAGAGCACCCTGCGCGTGTAGATGTTGCTGGTGTAGGGCTCGATGGA 97729 Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315 |||||||||||| | ||||| || ||| ||||||||||||||| | | ||| ||| Sbjct 97728 CTCGTTGTTGCCCAGGATCTGGGCAGTGGAGGCCGTGGGCATGGGGGAAATGAGGAGGCT 97669 Query 204316 GTTGCGCACACCGTA 204330 ||| | |||||||| Sbjct 97668 GTTCCTGACACCGTA 97654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795095384450080