Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq129 132 1e-25 >seq129 Length=2407505 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||||||||| ||||| |||||||| |||| ||||||||||| | || Sbjct 240188 CGCAGGCGCAGGACAAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTA 240129 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||||||||||| || || ||||| || | ||||||||| ||| || ||| Sbjct 240128 CGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCT 240069 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || ||| | ||||| | | || || || | Sbjct 240068 TCCTTGTCCTGGATCTTGGCCTTGACATTTTCAATAGTGTCACTGGGCTCGACTTCAAGG 240009 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || || |||||||| || || Sbjct 240008 GTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTG 239971 Score = 105 bits (116), Expect = 2e-17 Identities = 160/227 (70%), Gaps = 3/227 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || || || || || || ||||| |||| ||||||||||| || || Sbjct 239732 CGCAGGCGCAGCACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTA 239673 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| |||||||| || |||||||| || | ||||||||| || ||| || Sbjct 239672 CGGCCATCTTCGAGCTGCTTCCCTGCGAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCC 239613 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || ||| | |||||| | | || || || | Sbjct 239612 TCCTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCGACCTCAAGG 239553 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 ||||| ||||| || || || || || || || || || |||||| Sbjct 239552 GTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTG---CATTTT 239509 Score = 95.1 bits (104), Expect = 3e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || || || || || || || || |||| ||||||||||| || || | ||||| Sbjct 239952 CAGCACGAGATGCAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATC 239893 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 || |||||||| || |||||||| || | ||||||||| ||| || ||||| || Sbjct 239892 CTCGAGCTGCTTCCCTGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTC 239833 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| || ||| || | |||||| | | || || || | ||||| || Sbjct 239832 CTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGACTTCAAGGGTGATGGT 239773 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || || || || || || Sbjct 239772 CTTGCCAGTCAGGGTCTTGACGAAGATCTG 239743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178830698513206