Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq129 143 3e-29 seq47 95.1 1e-14 seq1 87.8 2e-12 >seq129 Length=2407505 Score = 143 bits (158), Expect = 3e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||||||||| || ||||| || || || || ||||| ||||||||| | || |||||| | Sbjct 239508 AAAAATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCC 239567 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 || |||| | | ||| | || | || |||| ||||| ||||| |||||| | || Sbjct 239568 CAGTGACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGA 239627 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| |||| || | ||| || || ||||| || || | || ||||| ||||| Sbjct 239628 CCAGCAGAGGCTGATCTTCGCAGGGAAGCAGCTCGAAGATGGCCGTACCCTGTCTGACTA 239687 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||| |||||| | || |||||| | |||||||| Sbjct 239688 CAACATCCAGAAGGAATCTACCCTGCATCTCGTGCTGCG 239726 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || |||||| ||| Sbjct 239740 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAAGTCGAGCCCAGT 239799 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | |||| || |||| ||||| || || || || | ||||| Sbjct 239800 GACACCATTGAGAACG-TCAAAGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCA 239858 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | ||| || || ||||| || || | || ||||| |||||||| Sbjct 239859 GCAGAGGCTGATCTTCGCAGGGAAGCAGCTCGAGGATGGCCGTACCCTGTCTGACTACAA 239918 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| || ||| | || |||||| | |||||||| | || || ||| Sbjct 239919 CATCCAGAAAGAATCTACCCTGCATCTCGTGCTGCGCCTCAGGGGTGGC 239967 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || |||||| ||| Sbjct 239968 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAAGTCGAGCCCAGT 240027 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| | || | || |||| ||||| || || || || | ||||| Sbjct 240028 GACACTATTGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCAG 240087 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| || | || |||||| ||||||||| Sbjct 240088 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTCTCTGACTACAAC 240147 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || ||||| | || ||||| Sbjct 240148 ATCCAGAAGGAGTCAACTCTGCACCTTGTCCTGCG 240182 >seq47 Length=4964275 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 133395 CACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGA 133454 ||||||||| | ||||| || || |||||||| || |||||||| ||| ||||| Sbjct 876834 CACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTG 876893 Query 133455 ATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTCC 133509 || || ||||| || || || |||||||||||||| || |||| |||||||||| Sbjct 876894 GTACTGGATGGGGAAGATGACGAACCGGCGGGGGTTCTCCCGCAGCAGCGGCTCC 876948 >seq1 Length=45240865 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| || ||| ||| ||||| ||| ||||||||| || ||||| ||||| | || | Sbjct 22187626 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 22187567 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||||||||| || || || ||||||||||||| ||| || || || || || | Sbjct 22187566 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 22187507 Query 133037 CCACCA 133042 | |||| Sbjct 22187506 CAACCA 22187501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500135174501120