Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq136 259 6e-64 >seq136 Length=1597971 Score = 259 bits (286), Expect = 6e-64 Identities = 1024/1597 (64%), Gaps = 32/1597 (2%) Strand=Plus/Minus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 |||||| || |||| ||||| || || ||||| ||||| || ||||| || || Sbjct 426765 TTCATCCTCTGCTTTGTACTTCTCTGCTTCTTGCACCATGCGGTCGATGTCGTCCTTGCT 426706 Query 6628 TAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTC 6687 | | ||||| ||||| || || || ||||| | || |||| | ||| || | Sbjct 426705 GAGGCGACCCTTGTCATTGGTGATGGTGATCTTGTTCTCCTTCCCCGTGCTCTTGTCCAC 426646 Query 6688 AGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGT 6747 || || || |||| || ||||| ||||| | || || | || | || || || Sbjct 426645 GGCGCTGACGTTCAGGATGCCATTGGCATCGATGTCAAAAGTGACCTCGATCTGGGGGAC 426586 Query 6748 ACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGT 6807 ||||| ||||| | || || || || | ||||| | || || || |||||||| | Sbjct 426585 TCCCCTGGGTGCTGGGGGGATGCCTGTCAGGTCAAACTTGCCCAGCAAGTTGTTATCCCT 426526 Query 6808 CGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGT-TGATTATCTTGTG 6866 | | | | ||||| ||||| || | | || || | | || || ||| Sbjct 426525 TGTCATAGCCCTCTCACCCTCATACACCTGCACCAGGAC-GCTGCTCTGGTTGTCTGAGT 426467 Query 6867 CCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGG 6926 || | |||| | || || || | || || || || || | | || | | || Sbjct 426466 AGGTGGTGAAGGTCTGAGTTTGTTTGGTGGGGATGGTGGTGTTGCGCTTGATGAGAGCGG 426407 Query 6927 TCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACA 6986 |||| | || || || |||| || || |||||||| || || |||| || | || Sbjct 426406 TCATCACTCCTCCGGCTGTCTCGATGCCCAGGGACAGAGGGGTGACATCCAGCAGCAGCA 426347 Query 6987 GGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGT 7046 | || || || || | || ||| | | ||| || ||||| || | || |||| Sbjct 426346 GATCCTGCACGTTCTCAGACTTGTCTCCCATGAGGATAGCTGCTTGTACAGCAGCACCGT 426287 Query 7047 ATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCG 7106 | || || |||||||||||||| || | || || || ||||| ||||| || ||||| Sbjct 426286 AAGCCACAGCCTCATCGGGGTTGATGCTCTTGTTAAGCTCTTTGCCGTTGAAGAAATCCT 426227 Query 7107 ATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCA 7166 | || | || || || ||||| || || || || || |||| ||||| || | | Sbjct 426226 GCAGCAGCTTCTGGATCTTGGGGATCCGGGTAGAGCCCCCCACCAGCACGATCTCCTGGA 426167 Query 7167 CTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTAC 7226 | || |||| ||| | || || || | || || || || |||| || Sbjct 426166 TCTGGCCCTTGTCGAGCTTGGCATCGCGCAGAGCCTTCTCCACCGGCTCCAGGGTGCCAC 426107 Query 7227 GGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAA 7286 |||| | ||| | || ||||| ||||| ||||| || ||||| || ||||| |||| Sbjct 426106 GGAAAAGGTCAGCATTGAGCTCCTCGAAACGGGCACGAGTGATGGAGGTGTAGAAGTCAA 426047 Query 7287 CGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGA---TAACGTTC 7343 ||| || | | || ||||| |||||| | | || ||| || || | || | Sbjct 426046 TGCCCTCAAACAGAGAGTCAATCTCAATGCTGGCCTG---CGTGGAGGAGCTGAGGGTGC 425990 Query 7344 GCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATAT 7403 ||||||| | |||||| ||||| || | || | | || ||| ||| |||| ||| | Sbjct 425989 GCTTTGCCCTCTCACAAGCCGTGCGCAGCCGCCTCACCGCTCGCTTGTTGCCGGCAATGT 425930 Query 7404 CTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAAT 7463 | ||| || || || || || ||||| ||||| | | | || || | Sbjct 425929 CACGCTTGTGCTTGCGCTTGAATTCTTCCACAAAGTGGTTCACCATGCGGTTGTCAAAGT 425870 Query 7464 CTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAA 7523 | || |||||||| || || || || || || | || || ||||| || || | || | Sbjct 425869 CCTCCCCACCCAAATGGGTGTCACCAGCTGTGGACTTTACCTCAAAAATCCCGTCCTCGA 425810 Query 7524 TGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTAT 7583 || | | | || |||||||| || || || ||||||||||| ||||| || ||| | | Sbjct 425809 TGGTAAGGATGGAGACATCAAAAGTGCCCCCTCCCAGGTCAAAGATGAGGACATTCTTCT 425750 Query 7584 CGTC------GTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCAT 7637 | | | | ||||| || || ||||| |||||||| || || || || || | Sbjct 425749 CCCCAGCCCGGGTTCCTTTCTTGTCCAGGCCGTAGGCGATAGCGGCTGCAGTGGGCTCGT 425690 Query 7638 TAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 | || ||||| | ||| || ||||| | || || | || || || || || || || Sbjct 425689 TGATGATACGCATCACA-TTGAGGCCTGTGATGGTGCCGGCGTCCTTGGTGGCCTGGCGC 425631 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || || || || ||||| || || || || | ||| || | | || || || ||| Sbjct 425630 TGGGAGTCATTGAAGTACGCAGGCACTGTGATGACAGCATTCTGCACCTTGCACCCCAGA 425571 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || | || || || || ||||| ||||| || ||||| || ||||| |||| | | Sbjct 425570 TAAGCCTCGGCAATCTCCTTCATCTTGGTCAGCACCATGGAGCTGATCTCCTCAG-GGAA 425512 Query 7817 AACTGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGG 7875 | || ||| | || || || | || || | | | |||| || || | || Sbjct 425511 GAAGGTCTTCATCTCCCCCTTGTACTCCACCTGCACCTTGGGCTT----GC--CTCCCTC 425458 Query 7876 GATAACCTTA---TACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTT 7932 | ||| | | | ||| | ||||| || || ||| |||| | |||| Sbjct 425457 ATTCACCACACGGAAAGGCCAGTGCTTCATGTCTGACTGCACCGTGGGGTCATCATACTT 425398 Query 7933 TCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTT 7992 | ||||| || || || |||||||| | ||||| |||||||||| ||| ||||| Sbjct 425397 GCGGCCGATGAGGCGTTTGGCATCAAAGATGGTGTTGGTGGGGTTCATTGCTACCTGGTT 425338 Query 7993 CTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGG-G 8051 || || ||||||||||| || || || || || || ||||| || || | |||| | Sbjct 425337 TTTGGCAGCGTCCCCGATGAGCCGCTCCGTA---TCGGTGAACGCCACATA-GCTGGGTG 425282 Query 8052 TCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGA 8111 | || || ||||| || ||||| || || || ||||| | ||| || ||||||| | Sbjct 425281 TGGTGCGGTTCCCCTGATCGTTGGCGATGATCTCTACCTTGCCGTGCTGGAAGACGCCCA 425222 Query 8112 CGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 |||| || ||||| || || | || || ||||| || Sbjct 425221 CGCAGGAGTACGTGGTGCCCAGGTCGATGCCGATCGC 425185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635085022135120