Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq129 93.3 3e-14 >seq129 Length=2407505 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| |||||||||||||| || || ||||| || | | || | | |||| || | || Sbjct 239943 ATGCAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCCTCGAGCTG 239884 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| ||||| || |||| | ||| || || || || |||||||| || || || || || Sbjct 239883 CTTCCCTGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTT 239824 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||| || | || | |||||| | || |||||||| |||| || ||||| || Sbjct 239823 GGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGACTTCAAGGGTGATGGTCTTGCCAGT 239764 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | || || || || |||||||| Sbjct 239763 CAGGGTCTTGACGAAGATCTGCAT 239740 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| ||||||||||| || || || ||||| || | | || | | |||| || | || Sbjct 239715 ATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCGAGCTG 239656 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| ||||| || |||| | ||| || || || |||||||| || || || || || || Sbjct 239655 CTTCCCTGCGAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTT 239596 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| |||| | |||||| | || || ||||| |||| || ||||| || Sbjct 239595 GGCCTTGACATTTTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGT 239536 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | || || || || |||||||| Sbjct 239535 CAGGGTCTTGACGAAGATCTGCAT 239512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396249335208426