Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30]
6,018 sequences; 1,052,600,561 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq586 136 7e-27
seq36 100 5e-16
>seq586
Length=108663
Score = 136 bits (150), Expect = 7e-27
Identities = 128/163 (79%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587
|||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 80838 GTGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGG 80779
Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647
|| ||| |||| || |||||||||||||||||||||| || ||||| ||||
Sbjct 80778 TTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCGGTCTGG 80719
Query 213648 GACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCC 213690
||| | | || | |||||| | | |||||| |||||||
Sbjct 80718 GACTCGATGATGGCGTACCAGAGCTGCTGGGCCTTCACCACCC 80676
Score = 116 bits (128), Expect = 7e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 213141 CCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCG 213200
|| ||||| || || ||||||||| | | ||||||||| |||||| ||||||||||
Sbjct 95848 CCCTTGCTGACCGGCGAGCCCTGGTAGGTGTCGTAGGGGCCCTGCTCCCTGGCCAGCTCA 95789
Query 213201 CAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTG 213260
||| |||| |||||| ||||||||||||| || || || | | |||||| ||
Sbjct 95788 CAGCTGGCCTCCAGGGCCCCGTAGTAGATGGTCTCGAAGATGTGCTGGTTGAGGCGCTGA 95729
Query 213261 GCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACC 213320
||||| | | | |||||| | | ||| | ||| | |||||||| ||||| ||
Sbjct 95728 GCCTCGGCGCTCTCGAAGGGGAACCGCATCAGGATGAAGGCGTCAGCCAGGCCCTGCACG 95669
Query 213321 CCGATGCCGATGGGTCTGTGTCTCAGGTTAGA 213352
|||||||| ||||| | ||| | | |||| ||
Sbjct 95668 CCGATGCCAATGGGCCGGTGCCGCCGGTTGGA 95637
Score = 111 bits (122), Expect = 3e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 212918 CTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCT 212977
|||||| || || ||||||||||| | | ||| | ||| |||||||||||||||
Sbjct 97788 CTGGAACTCCCCCGAGAGCACCCTGCGCGTGTAGATGTTGCTGGTGTAGGGCTCGATGGA 97729
Query 212978 CTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACT 213037
||||||||| ||||| ||||| |||||| ||| ||||||||||| | | ||||| ||
Sbjct 97728 CTCGTTGTTGCCCAGGATCTGGGCAGTGGAGGCCGTGGGCATGGGGGAAATGAGGAGGCT 97669
Query 213038 GTTCCTCACTCCGT 213051
|||||| || ||||
Sbjct 97668 GTTCCTGACACCGT 97655
Score = 96.9 bits (106), Expect = 6e-15
Identities = 112/151 (74%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 213813 ACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTC 213872
|||| || |||||| || || |||| ||| || || |||||||||||||| | | |
Sbjct 77807 ACTCGCTTCATGAAGAGATCAGGGATCCAGAGAGCAAAGAACAGGTCCCTGGCTCGCTGC 77748
Query 213873 TCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGC 213932
|| || || | ||| || || || || || |||||||||||| ||||||||||
Sbjct 77747 TCTTCTTTCCCTGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCCACGGC 77688
Query 213933 TCCATGTAGATGGCAAAGGCGCCCGGCCTCT 213963
|||| |||||||||||| || || || ||||
Sbjct 77687 TCCAGGTAGATGGCAAAAGCCCCAGGTCTCT 77657
Score = 93.3 bits (102), Expect = 8e-14
Identities = 98/129 (76%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 212696 GTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATC 212755
|||||||||||| |||||||| ||||| | | ||||| || ||||| | | |||
Sbjct 99975 GTTCAGGGACTGGCTCTGGTCGATGAAGGCCCCTCTGTCTGCAGCCATCTTCAGGATGGT 99916
Query 212756 TCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGG 212815
| | ||||||| |||||||||||||||| ||| | || ||||| || |||| | ||
Sbjct 99915 TTTTTGGGAGATCTCCCACACGGTCTTGTAGAGCTGCTTCAGGTCATCAGGGATCTCAGG 99856
Query 212816 GATGTTCTG 212824
|||||||||
Sbjct 99855 GATGTTCTG 99847
>seq36
Length=6369667
Score = 100 bits (110), Expect = 5e-16
Identities = 141/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 241430 AGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGAC 241489
|| |||| |||||| | || || | | ||||| || ||| | ||||| | |
Sbjct 4462641 AGCTGGGTGACCTGGGCGCGGAGGAGGTTGGCGGTGGCGGCCAGCTCGGCGTTCTGCCCC 4462700
Query 241490 TTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCAT 241549
|||||| ||||||| |||||||||||||| | ||| || ||||| || | | ||||||
Sbjct 4462701 TTGAGCGCCTTCACCTTCTCCTCCAGCCGGGAGATCCGCTCCAGCTTCCTCTTGCGGCAC 4462760
Query 241550 TTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCC 241609
|||| ||| || | |||||| || || | ||| || || ||||| | || |||||| |
Sbjct 4462761 TTGGAGGCGGCGATGCGGTTTCGCAGCCGCTTGCGCTCTGCCTTCAGCCGCTCCTGGCTC 4462820
Query 241610 TCCATGTCGATCGGAGAC 241627
||| ||| | ||| |||
Sbjct 4462821 TCCGCGTCCAGCGGCGAC 4462838
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931462725445120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |