Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq586 136 7e-27 seq36 100 5e-16 >seq586 Length=108663 Score = 136 bits (150), Expect = 7e-27 Identities = 128/163 (79%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||| Sbjct 80838 GTGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGG 80779 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||| |||| || |||||||||||||||||||||| || ||||| |||| Sbjct 80778 TTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCGGTCTGG 80719 Query 213648 GACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCC 213690 ||| | | || | |||||| | | |||||| ||||||| Sbjct 80718 GACTCGATGATGGCGTACCAGAGCTGCTGGGCCTTCACCACCC 80676 Score = 116 bits (128), Expect = 7e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 213141 CCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCG 213200 || ||||| || || ||||||||| | | ||||||||| |||||| |||||||||| Sbjct 95848 CCCTTGCTGACCGGCGAGCCCTGGTAGGTGTCGTAGGGGCCCTGCTCCCTGGCCAGCTCA 95789 Query 213201 CAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTG 213260 ||| |||| |||||| ||||||||||||| || || || | | |||||| || Sbjct 95788 CAGCTGGCCTCCAGGGCCCCGTAGTAGATGGTCTCGAAGATGTGCTGGTTGAGGCGCTGA 95729 Query 213261 GCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACC 213320 ||||| | | | |||||| | | ||| | ||| | |||||||| ||||| || Sbjct 95728 GCCTCGGCGCTCTCGAAGGGGAACCGCATCAGGATGAAGGCGTCAGCCAGGCCCTGCACG 95669 Query 213321 CCGATGCCGATGGGTCTGTGTCTCAGGTTAGA 213352 |||||||| ||||| | ||| | | |||| || Sbjct 95668 CCGATGCCAATGGGCCGGTGCCGCCGGTTGGA 95637 Score = 111 bits (122), Expect = 3e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 212918 CTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCT 212977 |||||| || || ||||||||||| | | ||| | ||| ||||||||||||||| Sbjct 97788 CTGGAACTCCCCCGAGAGCACCCTGCGCGTGTAGATGTTGCTGGTGTAGGGCTCGATGGA 97729 Query 212978 CTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACT 213037 ||||||||| ||||| ||||| |||||| ||| ||||||||||| | | ||||| || Sbjct 97728 CTCGTTGTTGCCCAGGATCTGGGCAGTGGAGGCCGTGGGCATGGGGGAAATGAGGAGGCT 97669 Query 213038 GTTCCTCACTCCGT 213051 |||||| || |||| Sbjct 97668 GTTCCTGACACCGT 97655 Score = 96.9 bits (106), Expect = 6e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 213813 ACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTC 213872 |||| || |||||| || || |||| ||| || || |||||||||||||| | | | Sbjct 77807 ACTCGCTTCATGAAGAGATCAGGGATCCAGAGAGCAAAGAACAGGTCCCTGGCTCGCTGC 77748 Query 213873 TCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGC 213932 || || || | ||| || || || || || |||||||||||| |||||||||| Sbjct 77747 TCTTCTTTCCCTGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCCACGGC 77688 Query 213933 TCCATGTAGATGGCAAAGGCGCCCGGCCTCT 213963 |||| |||||||||||| || || || |||| Sbjct 77687 TCCAGGTAGATGGCAAAAGCCCCAGGTCTCT 77657 Score = 93.3 bits (102), Expect = 8e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 212696 GTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATC 212755 |||||||||||| |||||||| ||||| | | ||||| || ||||| | | ||| Sbjct 99975 GTTCAGGGACTGGCTCTGGTCGATGAAGGCCCCTCTGTCTGCAGCCATCTTCAGGATGGT 99916 Query 212756 TCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGG 212815 | | ||||||| |||||||||||||||| ||| | || ||||| || |||| | || Sbjct 99915 TTTTTGGGAGATCTCCCACACGGTCTTGTAGAGCTGCTTCAGGTCATCAGGGATCTCAGG 99856 Query 212816 GATGTTCTG 212824 ||||||||| Sbjct 99855 GATGTTCTG 99847 >seq36 Length=6369667 Score = 100 bits (110), Expect = 5e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 241430 AGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGAC 241489 || |||| |||||| | || || | | ||||| || ||| | ||||| | | Sbjct 4462641 AGCTGGGTGACCTGGGCGCGGAGGAGGTTGGCGGTGGCGGCCAGCTCGGCGTTCTGCCCC 4462700 Query 241490 TTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCAT 241549 |||||| ||||||| |||||||||||||| | ||| || ||||| || | | |||||| Sbjct 4462701 TTGAGCGCCTTCACCTTCTCCTCCAGCCGGGAGATCCGCTCCAGCTTCCTCTTGCGGCAC 4462760 Query 241550 TTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCC 241609 |||| ||| || | |||||| || || | ||| || || ||||| | || |||||| | Sbjct 4462761 TTGGAGGCGGCGATGCGGTTTCGCAGCCGCTTGCGCTCTGCCTTCAGCCGCTCCTGGCTC 4462820 Query 241610 TCCATGTCGATCGGAGAC 241627 ||| ||| | ||| ||| Sbjct 4462821 TCCGCGTCCAGCGGCGAC 4462838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931462725445120