Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq586 104 4e-17 >seq586 Length=108663 Score = 104 bits (114), Expect = 4e-17 Identities = 101/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 221730 CCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGG 221789 |||||||||||||| |||| |||| | |||||| || || ||||||||||||||||||| Sbjct 80855 CCACCTCGTCCTTGCTGGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGG 80796 Query 221790 TCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGAC 221849 | ||||||| | || || ||| | ||| | ||||||||||||||| |||| Sbjct 80795 TGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGG 80736 Query 221850 CGCCAGTCTC 221859 ||||||||| Sbjct 80735 TGCCAGTCTC 80726 Score = 93.3 bits (102), Expect = 8e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 222019 CTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATC 222078 || |||| || || | || ||||||||| || |||||||| || || || || || Sbjct 77820 CTGGTTGGTTTCCACTCGCTTCATGAAGAGATCAGGGATCCAGAGAGCAAAGAACAGGTC 77761 Query 222079 TCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTC 222138 |||| |||||||| || || |||| ||| ||| |||| |||||||| ||||| Sbjct 77760 CCTGGCTCGCTGCTCTTCTTTCCCTGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTC 77701 Query 222139 AGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 ||||||||||||||| |||| ||| | ||| || |||| || Sbjct 77700 CAAGTGCCACGGCTCCAGGTAGATGGCAAAAGCCCCAGGTCTCT 77657 Score = 93.3 bits (102), Expect = 8e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 221122 CACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGAT 221181 ||| ||||| || |||||||||||||| | | ||| | ||| ||| | || ||||| Sbjct 97791 CACCTGGAACTCCCCCGAGAGCACCCTGCGCGTGTAGATGTTGCTGGTGTAGGGCTCGAT 97732 Query 221182 GCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAG 221241 | ||||||||||||||||||||| || ||| ||| ||||||||||| | | || || Sbjct 97731 GGACTCGTTGTTGCCCAGGATCTGGGCAGTGGAGGCCGTGGGCATGGGGGAAATGAGGAG 97672 Query 221242 ACTGTT 221247 ||||| Sbjct 97671 GCTGTT 97666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928774927649920