Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq129 96.9 2e-14 >seq129 Length=2407505 Score = 96.9 bits (106), Expect = 2e-14 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || |||| || || | | |||||| || ||||| |||||||| || || | || Sbjct 240146 TTGTAGTCAGAGAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGC 240087 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || |||||||| || ||||||||||| || ||||| |||||| ||||||||| ||| Sbjct 240086 TGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCAATAGTGTCA 240027 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || | ||||||||| || || || || || || ||||| || || || || Sbjct 240026 CTGGGCTCGACTTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTG 239971 Score = 86.0 bits (94), Expect = 4e-11 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 || || || || ||||| || ||| |||||| | || || |||| || || | | Sbjct 239957 AGGCGCAGCACGAGATGCAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGG 239898 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 ||| || || ||||| || || || || || | || || |||||||| || |||||| Sbjct 239897 CCATCCTCGAGCTGCTTCCCTGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCC 239838 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734 ||||| || ||||| |||||| ||||| || ||| || | ||||||||| Sbjct 239837 TTGTCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGACTTCAAGGGTG 239778 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || || ||||| ||||| || || Sbjct 239777 ATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTG 239743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267921058780664