Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq113 230 3e-55 seq99 122 1e-22 >seq113 Length=2083070 Score = 230 bits (254), Expect = 3e-55 Identities = 657/1003 (66%), Gaps = 8/1003 (1%) Strand=Plus/Minus Query 160033 AGAT-CAGCGATCTGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACG 160091 |||| ||| | | ||||||||| || || |||| |||| || || || ||| || Sbjct 2059419 AGATACAGGGCTTTGTGTCGCAAATACTCTTCCAAGCATTTCACTGCAAAAGGGTCGACA 2059360 Query 160092 TCTTCGTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCT 160151 || ||| || ||||| || |||| ||||| |||| |||| ||||||| || ||| Sbjct 2059359 TCAGTGTCAAACTTATTAGCAAACAAGTGGTG---GTTCCGTAGCATCCAGTTCAAGTCC 2059303 Query 160152 CCGGACCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCT 160211 || || || || || || || || ||||| || || |||| || ||||| | || Sbjct 2059302 CCTACTCCAAAAACACACACAGAGCGGATGTGAACTCCACTGCACGGTGGGTAGGGCGCA 2059243 Query 160212 CCTTTCGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATG 160271 ||||| | ||| |||||||| ||||||||||||| ||||||||||| | || | |||| Sbjct 2059242 CCTTTGGACACATCACCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGGGCATTCATG 2059183 Query 160272 TCGGAGGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGT 160331 || || |||||| |||| | | || || || || || | || || | ||| Sbjct 2059182 TCAGAAACGTCGTACTTGTCGCTGGAAGAAAACGCGCCTGGGACTTCAGGGATTCTCTGA 2059123 Query 160332 AGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCT 160391 | || |||||||||| || || |||||||| || || || | ||| || ||||||| | Sbjct 2059122 ATTGTTGCCCACAGGTACTCATCTGGGCTGTAAGTATCTTTCGCCCACTCAATGAACT-T 2059064 Query 160392 CCG-ATTAACCTGTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGC 160450 | | ||| |||| || || | || || ||| | || ||||| || || Sbjct 2059063 CAGTATTTTGCTGTTTTCTAGTACATATTCTACAAAGCTCCTGCTAACTACAAAATAGGC 2059004 Query 160451 GCTGCCGGAGAATATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGA 160510 ||||| || || | || | | ||| || | |||||| || ||||| Sbjct 2059003 ACTGCCAGAAAAAACTGGAGTACTGAGAGGTGGTAGTTGTTTGTCTATGCCTGTGTTCTT 2058944 Query 160511 CACCACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCAT 160570 | || | | | | | || | ||||||||||| || |||| ||||| Sbjct 2058943 TATTTTACCATCAATAATCTCATGGTGTTTCTTCCACCTTACTTCTTTGTAAACAGGCAT 2058884 Query 160571 GCGTTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAG 160630 ||| || || | ||||| |||| | || | ||| | | || || || || Sbjct 2058883 TTTTTCTGTTTCCAAGCTGTTTTCACCCTTAAGGGCTTTTAATTTCTCTACTATTTCCTT 2058824 Query 160631 GTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCT 160690 ||| ||||| | |||||||| |||| || | |||||| | ||| ||||| || | || Sbjct 2058823 GTTGGTCTTTATAGGAAAGTCCATACCACATAGGTTTATTAGGTATTTCCAGTTTGAACT 2058764 Query 160691 CAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTA 160750 || || || ||||||| ||||| ||||||||||| | |||||| ||||| || Sbjct 2058763 TCTTCTATGGAGATCTTTCATGCAGTTAATGTCTGCCTGCACTCTGCTCCACGAAGCATA 2058704 Query 160751 CACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCAC 160810 || || |||||| | |||| | |||||| ||||| ||||| || || |||||| Sbjct 2058703 TACCACACTCTCTAACTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATTCCCTT 2058644 Query 160811 CACCGCCAGAAAGAACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCT 160869 ||| | ||| || || || | | |||| ||| || || | ||| || | |||| Sbjct 2058643 CACAG-CAGCAAAAAAGGATTCTGGAGACTTTTTGTCTACATGAATGCAGTAAAAATTCT 2058585 Query 160870 GAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGA 160929 | || || ||||| | || || | || || | |||||| || || |||| | ||| | Sbjct 2058584 GTGGAGCATAGATTGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACCACTA 2058525 Query 160930 TAGAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTC 160989 | ||||| || || ||||| || | || ||| ||| || | | | | ||| || | Sbjct 2058524 TTGAGTAAGCAATTGGAAATTCTGCTTCTTCGTTACTGAGAGGTTCCATAATGTATTTCC 2058465 Query 160990 GCGTCTTGATAAAATAATCACAATCCCGCGTCATGTTGATATA 161032 || ||| | || | |||| || |||||||| ||||| Sbjct 2058464 TAGTTTTGGTGAAGGAGGCACAGTCTGCAGTCATGTTAATATA 2058422 >seq99 Length=3178465 Score = 122 bits (134), Expect = 1e-22 Identities = 236/348 (68%), Gaps = 3/348 (1%) Strand=Plus/Minus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 |||| ||||| | || || ||||| |||| ||| |||| || || |||||| | Sbjct 230818 TGTGGCGCAGGTACTCCTCGAGACACTGGATGGCCGCATCGTCCACCTCGGGGTCGAACT 230759 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 | || || | |||||||| | ||| || |||||| ||||||| || |||| | | Sbjct 230758 TGTTGGCCAGGAGATGGTGT---TGCTGCAGCATCCAGGGCACGTCGCCCACCCCGTAGA 230702 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 ||||| ||| || ||| |||| |||| || ||||| | || || || || || Sbjct 230701 TGCAGATGGAGCGCTGGTGGCGGCCGGTGCAGGGAGGGTAGGGCGCGCCCTTGCTCATGT 230642 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 | || || ||||| |||||| || | | || | || | |||||| ||| | | Sbjct 230641 CCCCCTCCAGGTACTCCCACTTGACCAGGCGGGGAAGGGCGTTCATGTCCGAGAGCTGGA 230582 Query 160285 ATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACA 160344 | || | | ||||| | || || ||||| ||||| || | ||||||||||||| Sbjct 230581 ACTTATCGCTGAGGGGCATACTCCCCGGCACGCCCGGCATGCGGTTCAGGGTGGCCCACA 230522 Query 160345 GGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTC 160392 ||| ||||| |||||||| |||||| ||||| || | ||||| || Sbjct 230521 CGTGCTCGTCAGGGCTGTAGCTGTCCTCGGACCACTCGAGGAACTTTC 230474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577175778685680