Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1 82.4 9e-11 >seq1 Length=45240865 Score = 82.4 bits (90), Expect = 9e-11 Identities = 94/124 (76%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 65087 TTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGC-GCTATTTATTGG 65145 |||| ||||| ||||| || |||||||| || || || || ||| ||||| | |||| Sbjct 22187504 TTGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCGGGTTCCTT-TGCTGCTATATTTTGG 22187562 Query 65146 TTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGAT 65205 |||||||| |||| || ||||| || | ||||| |||||||||||| | ||||| Sbjct 22187563 CTGAAGAAGAGGGGCCTGATGCCTGGATTGACTTTCTCCAATGAACTTATTAGCAGAGAT 22187622 Query 65206 GAGG 65209 |||| Sbjct 22187623 GAGG 22187626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596524723051840