Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq136 277 2e-69 seq129 196 6e-45 seq138 91.5 2e-13 >seq136 Length=1597971 Score = 277 bits (306), Expect = 2e-69 Identities = 997/1537 (65%), Gaps = 37/1537 (2%) Strand=Plus/Plus Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 |||||||| ||| | || || || || ||||| || || || || || || || || Sbjct 425245 GTAGAGATCATCGCCAACGATCAGGGGAACCGCACCACACCCAGCTATGTGGCGTTCACC 425304 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 |||| || || ||| | || || || || ||||| ||| ||| |||||||| | ||| Sbjct 425305 GATACGGAGCGGCTCATCGGGGACGCTGCCAAAAACCAGGTAGCAATGAACCCCACCAAC 425364 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || ||||||| || || || || || || ||||||| | || | || || Sbjct 425365 ACCATCTTTGATGCCAAACGCCTCATCGGCCGCAAGTATGATGACCCCACGGTGCAGTCA 425424 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAAT 195598 || || ||| ||||| ||| || || || || | ||||| | | | | Sbjct 425425 GACATGAAGCACTGGCCTTTCCGTGTGGTGAA---TGAGGGAGGCAAGCCCAAGGTGCAG 425481 Query 195599 GTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCC-GAAGAAATTTCGTCTATGGTGTT 195657 || || | | || |||| ||| | || |||| || || || || |||||| | Sbjct 425482 GTGGAGTACAAGGGGGAGATGAAG-ACCTTCTTCCCTGAGGAGATCAGCTCCATGGTGCT 425540 Query 195658 GATTAAGATGAAGGAGACTGCGGAATCTT-TCATGGGTAAAACTGTGAAAGATGCAGTTG 195716 || ||||||||||||| ||| || ||| || |||| || ||| | |||| || Sbjct 425541 GACCAAGATGAAGGAGATTGCCGAGGCTTATCTGGGGTGCAAG-GTGCAGAATGCTGTCA 425599 Query 195717 TGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTA 195776 | || || ||||| ||||||| ||| || || || ||||| || |||||||| | | | Sbjct 425600 TCACAGTGCCTGCGTACTTCAATGACTCCCAGCGCCAGGCCACCAAGGACGCCGGCACCA 425659 Query 195777 TTGCGGGTCTAAACTGTCTTA-GAATTATCAATGAACCAACAGCGGCTGCAATTGCTTAT 195835 | | || || || ||| | | || ||||| || || || || || || || || || Sbjct 425660 TCACAGGCCTCAA-TGTGATGCGTATCATCAACGAGCCCACTGCAGCCGCTATCGCCTAC 425718 Query 195836 GGTCTGGACAAGAAC--AA----GGACGAAGATAAAAATGTATTGATCTTTGATCTCGGT 195889 || ||||||||||| || || | || || ||||| | |||||||| || || Sbjct 425719 GGCCTGGACAAGAAAGGAACCCGGGCTGGGGAGAAGAATGTCCTCATCTTTGACCTGGGA 425778 Query 195890 GGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCT 195949 || || || ||||||||||| | || | || || | || || || || |||||| | Sbjct 425779 GGGGGCACTTTTGATGTCTCCATCCTTACCATCGAGGACGGGATTTTTGAGGTAAAGTCC 425838 Query 195950 ACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTT 196008 || |||||||| || ||| | ||||| || || || || || | | || ||| Sbjct 425839 ACAGCTGGTGACACCCATTTGGGTGGGGAGGACTTTGACAACCGCATGGTGAACCACTTT 425898 Query 196009 GTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCG 196068 || || || ||| || ||| | ||| || ||| | || || | || | | Sbjct 425899 GT-GGAAGAATTCAAGCGCAAGCACAAGCGTGACATTGCCGGCAACAAGCGAGCGGTGAG 425957 Query 196069 TCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCT---CTCTTCTACGGCTCAAAC 196125 ||||| | || || ||||| | || || || || || ||| || ||| || | Sbjct 425958 GCGGCTGCGCACGGCTTGTGAGAGGGCAAAGCGCACCCTCAGCTCCTCCACG---CAGGC 426014 Query 196126 AATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGC 196185 | |||||||||| || ||||||| || ||||||||||| || | || || ||||| Sbjct 426015 CAGCATTGAGATTGACTCTCTGTTTGAGGGCATTGACTTCTACACCTCCATCACTCGTGC 426074 Query 196186 ACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGT 196245 ||||| || ||| | || |||| | || | |||| || || || | | Sbjct 426075 CCGTTTCGAGGAGCTCAATGCTGACCTTTTCCGTGGCACCCTGGAGCCGGTGGAGAAGGC 426134 Query 196246 ACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATC 196305 || || || || ||| | || ||| || | | || || || || ||||| || || Sbjct 426135 TCTGCGCGATGCCAAGCTCGACAAGGGCCAGATCCAGGAGATCGTGCTGGTGGGGGGCTC 426194 Query 196306 AACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAA 196365 ||||| || || ||||| || || |||| |||||||| ||||| | || Sbjct 426195 TACCCGGATCCCCAAGATCCAGAAGCTGCTGCAGGATTTCTTCAACGGCAAAGAGCTTAA 426254 Query 196366 CAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCT 196425 ||| | |||||||| ||||| || || ||||| ||||| || || || || ||||| Sbjct 426255 CAAGAGCATCAACCCCGATGAGGCTGTGGCTTACGGTGCTGCTGTACAAGCAGCTAT--C 426312 Query 196426 CTCAGGTGTTGACAA---TAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGT 196482 |||| | | ||||| | | ||||| || ||||| ||||| || ||||| | || | Sbjct 426313 CTCATG-GGAGACAAGTCTGAGAACGTGCAGGATCTGCTGCTGCTGGATGTCACCCCTCT 426371 Query 196483 ATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAAC 196542 |||||||| | || ||||| || || || ||||| | || | | ||||| || Sbjct 426372 GTCCCTGGGCATCGAGACAGCCGGAGGAGTGATGACCGCTCTCATCAAGCGCAACACCAC 426431 Query 196543 TATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCA-ACCAGGTGTTC 196601 || || || || | || ||| | || || || || || || | || | || | Sbjct 426432 CATCCCCACCAAACAAACTCAGACCTTCACCACCTACTCAGACAACCAGAGCA-GCGTCC 426490 Query 196602 ATATTCAAGTATATGAAG--GAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAA 196658 | || || ||||| | |||| ||| || ||| ||||||| | | || || | Sbjct 426491 TGGTGCAGGTGTATGAGGGTGAGAGGGCT---ATGACAAGGGATAACAACTTGCTGGGCA 426547 Query 196659 CTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCT 196718 || || |||| || || || | |||||||| || || || ||||| | || | Sbjct 426548 AGTTTGACCTGACAGGCATCCCCCCAGCACCCAGGGGAGTCCCCCAGATCGAGGTCACTT 426607 Query 196719 TCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAAT 196778 | || || || || ||||| || || ||||||| || | ||||||| | || || Sbjct 426608 TTGACATCGATGCCAATGGCATCCTGAACGTCAGCGCCGTGGACAAGAGCACGGGGAAGG 426667 Query 196779 CTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTA 196838 | ||||| || |||||||||||||| || || ||||| || || || || | Sbjct 426668 AGAACAAGATCACCATCACCAATGACAAGGGTCGCCTCAGCAAGGACGACATCGACCGCA 426727 Query 196839 TGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGA 196875 |||| ||||| || || ||||||| | ||| || || Sbjct 426728 TGGTGCAAGAAGCAGAGAAGTACAAAGCAGAGGATGA 426764 >seq129 Length=2407505 Score = 196 bits (216), Expect = 6e-45 Identities = 180/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| ||||| ||||| || || |||||||| || || ||| | Sbjct 239968 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAAGTCGAGCCCAGT 240027 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || |||| |||||||| || || ||||||||||| || || || ||| Sbjct 240028 GACACTATTGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCAG 240087 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || |||||||| || ||||| |||||||| ||||||||| |||| |||||| Sbjct 240088 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTCTCTGACTACAAC 240147 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 | || |||||||| ||||| |||||||| || | || ||||||||| Sbjct 240148 ATCCAGAAGGAGTCAACTCTGCACCTTGTCCTGCGCCTGCGGGGTGGT 240195 Score = 152 bits (168), Expect = 7e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||||| ||||| || || |||||||| || || ||| | Sbjct 239740 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAAGTCGAGCCCAGT 239799 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || ||| ||||||||||||| || || ||||||||||| || || || ||| Sbjct 239800 GACACCATTGAGAACGTCAAAGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCAG 239859 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || || || || || ||||| || ||||| |||||||| |||| |||||| Sbjct 239860 CAGAGGCTGATCTTCGCAGGGAAGCAGCTCGAGGATGGCCGTACCCTGTCTGACTACAAC 239919 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || || || ||||| || || || || || | || ||||||| Sbjct 239920 ATCCAGAAAGAATCTACCCTGCATCTCGTGCTGCGCCTCAGGGGTGG 239966 >seq138 Length=2120562 Score = 91.5 bits (100), Expect = 2e-13 Identities = 125/174 (72%), Gaps = 3/174 (2%) Strand=Plus/Plus Query 195814 AACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATT 195873 |||||| ||||| ||||||||||| ||||||||| | || | ||| || || | | Sbjct 827543 AACAGCTGCTGCCATTGCTTATGGACTGGACAAG---AGAGAGGGAGAGAAGAACATCCT 827599 Query 195874 GATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTAT 195933 | || || || || ||||| || |||||||| || || |||| ||||| ||| | Sbjct 827600 TGTATTCGACCTGGGCGGTGGAACTTTTGATGTGTCCCTCCTCACAATTGACAATGGAGT 827659 Query 195934 ATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 || ||||| ||||||| ||| || ||||| || ||||| ||||| || || Sbjct 827660 CTTTGAAGTTGTGGCTACTAATGGAGACACTCACCTGGGTGGAGAAGACTTTGA 827713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657812912300960