Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq4 179 5e-39 seq8 176 6e-38 seq586 125 9e-23 seq47 98.7 1e-14 seq4643 96.9 4e-14 seq247 95.1 1e-13 >seq4 Length=19526422 Score = 179 bits (198), Expect = 5e-39 Identities = 161/202 (80%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | |||||||||||| ||||||||||| |||| | || Sbjct 19426071 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 19426130 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| ||||||| |||| | Sbjct 19426131 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCCGCGATGCGCTCGAAGA 19426190 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 19426191 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 19426250 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 19426251 GCACCTGCTTCAGCACCTTGTA 19426272 Score = 98.7 bits (108), Expect = 1e-14 Identities = 80/97 (82%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 1254448 CGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGA 1254507 ||||||| |||| ||||||||||| || |||||||||| ||| | |||| |||| Sbjct 19405253 CGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGA 19405312 Query 1254508 TGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 ||||| |||||||||||||||||| ||||||||||| Sbjct 19405313 TGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGTA 19405349 >seq8 Length=16390125 Score = 176 bits (194), Expect = 6e-38 Identities = 160/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | |||||||||||| ||||||||||| |||| | || Sbjct 4435449 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 4435508 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||| ||||| |||||||||| || ||||||| | | ||||| || | | Sbjct 4435509 TGGTGGAGCGTTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCGGCAATGCGCTCAAAGA 4435568 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||||||| |||||||||| ||| | |||| |||||||||| ||| |||| Sbjct 4435569 TGTCGTTGACAAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCAGGGT 4435628 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 4435629 GCACCTGCTTCAGCACCTTGTA 4435650 >seq586 Length=108663 Score = 125 bits (138), Expect = 9e-23 Identities = 129/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226 ||||||||||||||||||||| || | | || |||||||||||||||||| | || Sbjct 80829 ACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTC 80770 Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286 |||| || |||||||| |||||||||||| | ||| |||||| |||| | | ||| | Sbjct 80769 CTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCGGTCTGGGACTCGATG 80710 Query 1628287 ATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCT 1628335 ||||| |||||| ||| | || ||| || | ||| ||||||||| Sbjct 80709 ATGGCGTACCAGAGCTGCTGGGCCTTCACCACCCTGCGCACGCGGCCCT 80661 Score = 96.9 bits (106), Expect = 4e-14 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 1630175 CGGCAAAGCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGT 1630234 |||||| ||| ||||| || || |||||||||||||| || ||||| || || ||||||| Sbjct 76693 CGGCAAGGCCAATGCCCCCAGCAGACTTGGAGATGAGGGCACACTGCTTCAGGGTGTCGT 76634 Query 1630235 AGATGCCCTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCA 1630277 ||||||| ||||| |||| |||||||| || || ||||| Sbjct 76633 AGATGCCTTCGATGCTGTCGTCCTTCATGCACAGCAGGAAGCA 76591 Score = 96.9 bits (106), Expect = 4e-14 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 1627348 AAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCTCGCACGCCTCG 1627407 || || ||||||||||| | |||||||||||||||| ||||| | |||| | |||| Sbjct 97784 AACTCCCCCGAGAGCACCCTGCGCGTGTAGATGTTGCTGGTGTAGGGCTCGATGGACTCG 97725 Query 1627408 GTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGGAG 1627460 |||||||||||||||| | || | ||||||||||||| | | | |||||| Sbjct 97724 TTGTTGCCCAGGATCTGGGCAGTGGAGGCCGTGGGCATGGGGGAAATGAGGAG 97672 Score = 93.3 bits (102), Expect = 5e-13 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 1627787 CGTGGTAGACCGTCTCAAAGATGGCCCGGTTGAGGCGCCGCGCGCCGGCGCTCTCCCACG 1627846 ||| ||||| ||||| |||||| | ||||||||||| | || |||||||||| | | Sbjct 95769 CGTAGTAGATGGTCTCGAAGATGTGCTGGTTGAGGCGCTGAGCCTCGGCGCTCTCGAAGG 95710 Query 1627847 GCAGGTCCATCATGGCAAACACGTCGGCGAGGCCCTGCACGCCGACGCCCATCGGCCGGT 1627906 | | ||||| | || |||| || |||||||||||||||| ||| || ||||||| Sbjct 95709 GGAACCGCATCAGGATGAAGGCGTCAGCCAGGCCCTGCACGCCGATGCCAATGGGCCGGT 95650 Query 1627907 GGCGCAGGTTCGAG 1627920 | ||| |||| ||| Sbjct 95649 GCCGCCGGTTGGAG 95636 >seq47 Length=4964275 Score = 98.7 bits (108), Expect = 1e-14 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 869830 CACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACTTGCTG 869889 ||||||||| || ||||||| |||||||||||||| |||||||||| ||| | | || Sbjct 876834 CACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTG 876893 Query 869890 GTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGCGCAACAGGGGTTC 869943 ||| |||| ||||||| ||| || ||| |||||| || |||| ||| || || Sbjct 876894 GTACTGGATGGGGAAGATGACGAACCGGCGGGGGTTCTCCCGCAGCAGCGGCTC 876947 >seq4643 Length=1193 Score = 96.9 bits (106), Expect = 4e-14 Identities = 122/165 (74%), Gaps = 6/165 (4%) Strand=Plus/Plus Query 512000 GTGCTGGGCATCGAGGCCGCCGTG-GCCGTGCTCTTTTCCGAGA--TCAAGGCCGTCATC 512056 ||||||||||||||||||| || || || || || || || | ||||||| Sbjct 1001 GTGCTGGGCATCGAGGCCG---TGCGCAAGGCGCTGGAGCGGGAGCTCTACCACGTCATC 1057 Query 512057 TCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACACCATGTGC 512116 ||||| |||||| ||||||||||| |||| ||| | |||||| |||||||||| | Sbjct 1058 TCCTTCGACGGCTCCTACGTCAACTACCGGCACCTGGCGCTGCTGTGCGACACCATGACC 1117 Query 512117 TGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCGC 512161 | |||||| || ||||| |||| || |||||| |||||||| Sbjct 1118 TCCCGCGGGCACCTGATGGCCATCACCCGGCACGGCGTCAACCGC 1162 >seq247 Length=1266348 Score = 95.1 bits (104), Expect = 1e-13 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 1852372 CTGGTACTCGGTGCCGCGCACAAACTCGAGTCCGCCCAGCGGCACGCCGATGTGCTGGAG 1852431 |||||| |||||||| || ||||| ||| |||| ||||| |||||| || || Sbjct 210225 CTGGTAATCGGTGCCCCGGACAAATCTGAGCTTCTCCAGGGGCACCCCGATGCTCTCCAG 210284 Query 1852432 CATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGGTGTTCGACCAGGTCCCACGGCGT 1852491 |||||| |||||| | |||||| | ||| ||| | || | ||| |||||||| | Sbjct 210285 CATGGCTTTGATGACCTGCTCGTAGTACCGGGTCCGCAGCTCCAGCAGCTCCCACGGAGC 210344 Query 1852492 CTTGCCGTTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGAT 1852533 ||| |||||| |||| ||| || | ||| ||||||||||| Sbjct 210345 CTTCATGTTGTCCAGGTAGGCATGGAGGTCAGCAAAGAGGAT 210386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106645334737706