Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq4 224 2e-52 seq8 219 7e-51 seq394 136 6e-26 seq586 105 1e-16 seq47 105 1e-16 seq247 95.1 2e-13 seq4643 87.8 3e-11 >seq4 Length=19526422 Score = 224 bits (248), Expect = 2e-52 Identities = 196/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| |||||| ||| Sbjct 19426032 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 19426091 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| || | | ||| ||| ||||||||| | Sbjct 19426092 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 19426151 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||||||| ||||||| |||| ||||||||||| || ||||||| Sbjct 19426152 GCGCCAGGCGCGAGGCCTCGCCCGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 19426211 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 19426212 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 19426271 Query 1485710 AAAC 1485713 | || Sbjct 19426272 ACAC 19426275 Score = 100 bits (110), Expect = 5e-15 Identities = 82/100 (82%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 1485614 CGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGATTTGTTGGAGA 1485673 ||||||| |||| ||||||||||| || ||||||||||| ||| | ||| |||| Sbjct 19405253 CGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGA 19405312 Query 1485674 TGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAAAC 1485713 ||||| |||||||||||||||||| ||||||||||| || Sbjct 19405313 TGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGTACAC 19405352 >seq8 Length=16390125 Score = 219 bits (242), Expect = 7e-51 Identities = 195/244 (80%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| |||||| ||| Sbjct 4435410 TGTACTTGGTGACAGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 4435469 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| || | | ||| ||| ||| ||||| | Sbjct 4435470 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGTTTGTTGTAGT 4435529 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||||||| | | ||||| || | |||||||||||||| ||||||| Sbjct 4435530 GCGCCAGGCGCGAGGCCTCGCCGGCAATGCGCTCAAAGATGTCGTTGACAAAGGAGTTCA 4435589 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||||| ||| |||||||||||||| |||||||||| Sbjct 4435590 TGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCAGGGTGCACCTGCTTCAGCACCTTGT 4435649 Query 1485710 AAAC 1485713 | || Sbjct 4435650 ACAC 4435653 >seq394 Length=302097 Score = 136 bits (150), Expect = 6e-26 Identities = 168/228 (74%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||| ||||||||||| ||||| || |||||||||| |||||| || ||| ||| Sbjct 100710 TGTACTTGGCCACGGCCTTGGTGCCCTCGGACACGGCGTGCCGGGCCAGCTCCCCGGGCA 100651 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCG--CTTGTTAGT 1485587 | ||| ||| | || | ||| | ||||||| ||| | ||| ||| | |||| Sbjct 100650 GCAGCAGCCGCGCCGCCGCCTGCACCTCGCGGCTGCTCAGGGTGGCGCGGCCCCCGTAGT 100591 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 |||||||||| | ||||||| | | || || | ||||||| | || |||||||| Sbjct 100590 --GCGCCAGGCGCGCCGCCTCGGCCGCCAGCCGCTCCAGCATGTCGCTCACGAACGAGTT 100533 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTG 1485695 |||||| ||| | ||| |||||||| | ||||||||||||||| Sbjct 100532 CATGATGCTCATGGCCTTGGACGAGATGCCGAGGTCGGGGTGCACCTG 100485 >seq586 Length=108663 Score = 105 bits (116), Expect = 1e-16 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 2071579 ACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGCTGGTC 2071638 |||| |||||||||||||||| || | ||||||||||||||||||||||||| || Sbjct 80829 ACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTC 80770 Query 2071639 AGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACG 2071698 |||| || |||||||| ||||||||||| | || |||||| |||| | | || | Sbjct 80769 CTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCGGTCTGGGACTCGATG 80710 Query 2071699 ATGGCCGACCA 2071709 ||||| |||| Sbjct 80709 ATGGCGTACCA 80699 Score = 100 bits (110), Expect = 5e-15 Identities = 109/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 2070052 GCCGCATGGTAGATCGTCTCAAAGATGGTGC-GGTTGAGGCGACGCGCGCCGGCGCTCTC 2070110 ||| | | |||||| ||||| |||||| ||| |||||||||| | || |||||||||| Sbjct 95773 GCCCCGTAGTAGATGGTCTCGAAGATG-TGCTGGTTGAGGCGCTGAGCCTCGGCGCTCTC 95715 Query 2070111 CCACGGCAGGTCCATCATGGCAAACGCGTCGGCCAGGCCCTGCACGCCGACGCCCATCGG 2070170 | || | ||||| | || ||||| ||||||||||||||||||| ||| || || Sbjct 95714 GAAGGGGAACCGCATCAGGATGAAGGCGTCAGCCAGGCCCTGCACGCCGATGCCAATGGG 95655 Query 2070171 CCGGTGGCGCAGGTTCGAGTGC 2070192 |||||| ||| |||| ||| || Sbjct 95654 CCGGTGCCGCCGGTTGGAGCGC 95633 Score = 93.3 bits (102), Expect = 7e-13 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 2069617 AAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGACCTCGCACGCCTCG 2069676 || || ||||||||||| | |||||||||||||||||| ||| | |||| | |||| Sbjct 97784 AACTCCCCCGAGAGCACCCTGCGCGTGTAGATGTTGCTGGTGTAGGGCTCGATGGACTCG 97725 Query 2069677 GTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATG 2069715 |||||||||||||||| | || | ||||||||||||| Sbjct 97724 TTGTTGCCCAGGATCTGGGCAGTGGAGGCCGTGGGCATG 97686 Score = 91.5 bits (100), Expect = 2e-12 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 2073650 CGGCAAAGCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGT 2073709 |||||| ||| ||||| || || | |||||||||||| || |||| ||||| || |||| Sbjct 76693 CGGCAAGGCCAATGCCCCCAGCAGACTTGGAGATGAGGGCACACTGCTTCAGGGTGTCGT 76634 Query 2073710 AGATGCCCTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCA 2073752 ||||||| ||||| |||| |||||||| || ||| ||||| Sbjct 76633 AGATGCCTTCGATGCTGTCGTCCTTCATGCACAGCAGGAAGCA 76591 >seq47 Length=4964275 Score = 105 bits (116), Expect = 1e-16 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 796303 ACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGG 796362 |||||||| || ||||| ||||||||||||||||| |||||||||| ||| || ||| Sbjct 876835 ACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTGG 876894 Query 796363 TAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 || |||||||||| | || || || ||||||||| || ||||||||||| Sbjct 876895 TACTGGATGGGGAAGATGACGAACCGGCGGGGGTTCTCCCGCAGCAGCGGCTC 876947 >seq247 Length=1266348 Score = 95.1 bits (104), Expect = 2e-13 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 2411714 GCTGGTAATCGCTGCCGCGCACAAATTCGAGACGATCCAGCGGGACGCCAATGTGCTGGA 2411773 ||||||||||| |||| || |||||| ||| ||||| || || || ||| || | Sbjct 210224 GCTGGTAATCGGTGCCCCGGACAAATCTGAGCTTCTCCAGGGGCACCCCGATGCTCTCCA 210283 Query 2411774 GCATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGGTGCTCGACGAGGTCCCACGGCG 2411833 ||||||| |||||| | |||||| | ||| ||| |||| | || |||||||| | Sbjct 210284 GCATGGCTTTGATGACCTGCTCGTAGTACCGGGTCCGCAGCTCCAGCAGCTCCCACGGAG 210343 Query 2411834 TCTTGCCATTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATCCTCACC 2411883 ||| ||||| |||| ||| || | ||| ||||||||||| ||||| Sbjct 210344 CCTTCATGTTGTCCAGGTAGGCATGGAGGTCAGCAAAGAGGATTGTCACC 210393 >seq4643 Length=1193 Score = 87.8 bits (96), Expect = 3e-11 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 434126 CGTGATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 434185 ||| |||||||| |||||| ||||||||||| |||| ||| | |||||| |||||| Sbjct 1051 CGTCATCTCCTTCGACGGCTCCTACGTCAACTACCGGCACCTGGCGCTGCTGTGCGACAC 1110 Query 434186 CATGTGCTGTCGCGGCTCGGTGGTGGCCGTCACGCGGCACGGCTTCAACCG 434236 |||| || ||||| || ||||| |||| ||||||||| ||||||| Sbjct 1111 CATGACCTCCCGCGGGCACCTGATGGCCATCACCCGGCACGGCGTCAACCG 1161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915606237891902