Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zonotrichia_20albicollis_20[refseq_20GCF_5F000385455.1_202013-04-30] 6,018 sequences; 1,052,600,561 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq129 141 6e-29 >seq129 Length=2407505 Score = 141 bits (156), Expect = 6e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 34748 TTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCC 34807 || || |||| || | |||||| ||||| | || ||||||||| ||||| ||||| Sbjct 240197 TTACCACCCCGCAGGCGCAGGACAAGGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCA 240138 Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867 || ||| | || |||| ||||| ||||| || || |||||||| | |||||||| | Sbjct 240137 GAGAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGA 240078 Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCG 34927 || | || |||||||| | || || ||||| | | || | ||| ||| |||| Sbjct 240077 GGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCAATAGTGTCACTGGGCTCG 240018 Query 34928 ACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || |||| ||| |||||||| || || |||||||| ||||||||||||||| Sbjct 240017 ACTTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 239967 Score = 132 bits (146), Expect = 3e-26 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 |||||||| ||||| ||||| || ||| | || |||| || || ||||| || |||||| Sbjct 239702 TCCTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCGAGCTGCTTCCCTGCGAAG 239643 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 ||||| | ||||||||| | || | ||||||||||| | || || ||||| | Sbjct 239642 ATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTT 239583 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | ||| ||| |||||| |||| ||| |||||||| || || |||||||| || Sbjct 239582 TCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACG 239523 Query 34967 AAGATCTGCAT 34977 ||||||||||| Sbjct 239522 AAGATCTGCAT 239512 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||| | | ||| || || || | ||| || ||||| ||||| ||||| || Sbjct 239966 CCACCCCTGAGGCGCAGCACGAGATGCAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAC 239907 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| | || |||| || || ||||| || ||||||||||| | |||||||| | || Sbjct 239906 AGGGTACGGCCATCCTCGAGCTGCTTCCCTGCGAAGATCAGCCTCTGCTGGTCAGGAGGG 239847 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || |||||||| | || || ||||||| | || | ||| ||| |||||| Sbjct 239846 ATGCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGACT 239787 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| ||| |||||||| || || |||||||| || ||||||||||| Sbjct 239786 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 239740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325668912265142